Thermodynamic calculations for biochemical transport and reaction processes in metabolic networks

scientific article

Thermodynamic calculations for biochemical transport and reaction processes in metabolic networks is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.BPJ.2010.09.043
P932PMC publication ID2980713
P698PubMed publication ID21081060
P5875ResearchGate publication ID47808707

P50authorVassily HatzimanikatisQ41044538
P2093author name stringMatthias Heinemann
Daniel A Beard
Anne Kümmel
Stefan J Jol
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Oxidative ATP synthesis in skeletal muscle is controlled by substrate feedbackQ33249991
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Energy balance for analysis of complex metabolic networksQ34178210
Mitochondrial carriers in the cytoplasmic state have a common substrate binding siteQ34479532
Candidate states of Helicobacter pylori's genome-scale metabolic network upon application of "loop law" thermodynamic constraints.Q34601005
Dynamics of muscle glycogenolysis modeled with pH time course computation and pH-dependent reaction equilibria and enzyme kineticsQ34829927
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Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity.Q40636570
Metabolic control analysis of biochemical pathways based on a thermokinetic description of reaction ratesQ41847582
Genome-scale thermodynamic analysis of Escherichia coli metabolismQ42155867
The thermodynamic meaning of metabolic exchange fluxesQ42406509
Extreme pathways and Kirchhoff's second law.Q43122158
Thermodynamic-based computational profiling of cellular regulatory control in hepatocyte metabolismQ45126764
Thermodynamically based profiling of drug metabolism and drug-drug metabolic interactions: a case study of acetaminophen and ethanol toxic interactionQ46824737
Identification of distributed metabolic objectives in the hypermetabolic liver by flux and energy balance analysisQ51320677
Thermodynamic constraints for biochemical networksQ51676908
Metabolic futile cycles and their functions: a systems analysis of energy and controlQ51933046
Relations between biochemical thermodynamics and biochemical kineticsQ51940106
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networksQ51995141
Identification of localized and distributed bottlenecks in metabolic pathwaysQ52407731
In vivo 31P NMR studies on the role of the vacuole in phosphate metabolism in yeastsQ57768903
How reliable are thermodynamic feasibility statements of biochemical pathways?Q58325224
Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometryQ81157263
Cross-platform comparison of methods for quantitative metabolomics of primary metabolismQ83390070
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectmetabolic networkQ2263094
P1104number of pages6
P304page(s)3139-3144
P577publication date2010-11-01
P1433published inBiophysical JournalQ2032955
P1476titleThermodynamic calculations for biochemical transport and reaction processes in metabolic networks
P478volume99

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Q97643842An upper limit on Gibbs energy dissipation governs cellular metabolism
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Q28080221Quantification of Microbial Phenotypes
Q35895080Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction.
Q101564205Redox-informed models of global biogeochemical cycles
Q28481411System-level insights into yeast metabolism by thermodynamic analysis of elementary flux modes
Q42647472The Influence of Crowding Conditions on the Thermodynamic Feasibility of Metabolic Pathways

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