Interference probing of rRNA with snoRNPs: a novel approach for functional mapping of RNA in vivo

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Interference probing of rRNA with snoRNPs: a novel approach for functional mapping of RNA in vivo is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1261/RNA.7190104
P932PMC publication ID1370603
P698PubMed publication ID15208448
P5875ResearchGate publication ID8500585

P2093author name stringBen Liu
Maurille J Fournier
P2860cites workSequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA.Q24533023
Nucleolar factors direct the 2'-O-ribose methylation and pseudouridylation of U6 spliceosomal RNAQ24554419
The complete atomic structure of the large ribosomal subunit at 2.4 A resolutionQ27626400
The structural basis of ribosome activity in peptide bond synthesisQ27626414
Crystal structure of the ribosome at 5.5 A resolutionQ27630949
Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progressionQ27640330
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiaeQ27860636
Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2'-O-ribose methylation of a conserved rRNA position in yeast.Q27932027
Multiple genes encode the translation elongation factor EF-1 gamma in Saccharomyces cerevisiaeQ27934313
Mutations in elongation factor 1beta, a guanine nucleotide exchange factor, enhance translational fidelityQ27935733
Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assemblyQ27938039
Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAsQ27939349
Improved method for high efficiency transformation of intact yeast cellsQ28131608
A computational screen for methylation guide snoRNAs in yeastQ28137615
The numerous modified nucleotides in eukaryotic ribosomal RNAQ28263677
Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAsQ28287395
Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guidesQ28294050
Antisense snoRNAs: a family of nucleolar RNAs with long complementarities to rRNAQ28297077
pH-dependent conformational flexibility within the ribosomal peptidyl transferase center.Q28362660
rRNA modifications and ribosome functionQ28610126
Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1.Q28769587
The small nucleolar RNAsQ29616486
Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteriaQ30827747
Probing RNA in vivo with methylation guide small nucleolar RNAsQ31879221
Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNAQ33959977
Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase centerQ34181714
Osmolytes stimulate the reconstitution of functional 50S ribosomes from in vitro transcripts of Escherichia coli 23S rRNA.Q34364319
Ribosomal RNA pseudouridines and pseudouridine synthasesQ34571025
RNA-guided nucleotide modification of ribosomal and other RNAsQ34997177
A spontaneous point mutation in the single 23S rRNA gene of the thermophilic arachaeon Sulfolobus acidocaldarius confers multiple drug resistanceQ35984233
23S rRNA positions essential for tRNA binding in ribosomal functional sitesQ36003626
Higher order interactions in 23s rRNAQ37041757
U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processingQ38291036
Mapping 2'-O-methyl groups in ribosomal RNA.Q38291747
SnR31, snR32, and snR33: three novel, non-essential snRNAs from Saccharomyces cerevisiaeQ38314096
Mutations at nucleotides G2251 and U2585 of 23 S rRNA perturb the peptidyl transferase center of the ribosomeQ38348437
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiaeQ39726390
Small RNA chaperones for ribosome biogenesisQ40383355
Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNAQ40437371
A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast.Q41355883
Ribosomes and translationQ41550248
Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA.Q41608299
Mutational analysis of the donor substrate binding site of the ribosomal peptidyltransferase center.Q41788158
The critical role of the universally conserved A2602 of 23S ribosomal RNA in the release of the nascent peptide during translation termination.Q44283112
The donor substrate site within the peptidyl transferase loop of 23 S rRNA and its putative interactions with the CCA-end of N-blocked aminoacyl-tRNA(Phe).Q54575472
Insights into the structure and function of a guide RNPQ64443130
Mutations in the peptidyl transferase center of 23 S rRNA reveal the site of action of sparsomycin, a universal inhibitor of translationQ71396621
Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic-ribosome complexesQ72134539
An efficient site-directed mutagenesis method based on PCRQ72443360
Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunitsQ77760336
P433issue7
P407language of work or nameEnglishQ1860
P304page(s)1130-1141
P577publication date2004-07-01
P1433published inRNAQ7277164
P1476titleInterference probing of rRNA with snoRNPs: a novel approach for functional mapping of RNA in vivo
P478volume10

Reverse relations

cites work (P2860)
Q36321153ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs
Q42074816Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing
Q24803240Chemical engineering of the peptidyl transferase center reveals an important role of the 2'-hydroxyl group of A2451
Q36900532Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome
Q28647060Modified Method of rRNA Structure Analysis Reveals Novel Characteristics of Box C/D RNA Analogues
Q33524755Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli.
Q34449160Profiling of ribose methylations in RNA by high-throughput sequencing
Q39385280Protein Folding Activity of the Ribosome is involved in Yeast Prion Propagation
Q38828283Quality control of chemically damaged RNA.
Q83002527RNA under attack: cellular handling of RNA damage
Q33799108Regulation of pre-mRNA splicing in Xenopus oocytes by targeted 2'-O-methylation
Q36900536The U1 snRNA hairpin II as a RNA affinity tag for selecting snoRNP complexes
Q36452595The principles of guiding by RNA: chimeric RNA-protein enzymes
Q42166075The spatial-functional coupling of box C/D and C'/D' RNPs is an evolutionarily conserved feature of the eukaryotic box C/D snoRNP nucleotide modification complex
Q42291802Unusual C΄/D΄ motifs enable box C/D snoRNPs to modify multiple sites in the same rRNA target region

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