Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation

scientific article

Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/GBE/EVQ031
P932PMC publication ID2997551
P698PubMed publication ID20624747
P5875ResearchGate publication ID45167143

P50authorAndrew RambautQ28320577
Jodi A. LindsayQ41847846
Adam A WitneyQ42128234
Davida S SmythQ56256500
Nouri L Ben ZakourQ58149804
Jason HindsQ60983251
P2093author name stringJosé R Penadés
Lucy A Weinert
Jonathan P Bollback
Katherine A Gould
J Ross Fitzgerald
Caitriona M Guinane
Robyn A Cartwright
Bethan V Lowder
Cyril J Smyth
Maria A Tormo-Mas
P2860cites workRelaxed phylogenetics and dating with confidenceQ21146068
The RAST Server: rapid annotations using subsystems technologyQ21263157
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genomeQ24681858
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assembliesQ24812045
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomesQ24817116
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0Q26778434
Staphylococcal complement inhibitor: structure and active sitesQ27647431
Base-calling of automated sequencer traces using phred. I. Accuracy assessmentQ27860665
BEAST: Bayesian evolutionary analysis by sampling treesQ27860723
Dating of the human-ape splitting by a molecular clock of mitochondrial DNAQ27860908
Artemis: sequence visualization and annotationQ27861024
PAML: a program package for phylogenetic analysis by maximum likelihoodQ27861096
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary modelsQ28144403
Genome and virulence determinants of high virulence community-acquired MRSAQ28202214
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoideaQ28245344
Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felinesQ28768291
HyPhy: hypothesis testing using phylogeniesQ29013475
Bayes empirical bayes inference of amino acid sites under positive selectionQ29547692
Evolution of MRSA during hospital transmission and intercontinental spreadQ29615141
ACT: the Artemis Comparison ToolQ29616601
Viewing and editing assembled sequences using ConsedQ29950572
Genes under positive selection in Escherichia coli.Q30157906
Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureusQ30382219
A novel von Willebrand factor binding protein expressed by Staphylococcus aureusQ31095082
Sorting a Staphylococcus aureus phage display library against ex vivo biomaterialQ31111021
Molecular correlates of host specialization in Staphylococcus aureusQ33304456
Horizontal gene transfers link a human MRSA pathogen to contagious bovine mastitis bacteriaQ33363540
Surface proteins that promote adherence of Staphylococcus aureus to human desquamated nasal epithelial cellsQ33404458
Population structure of a hybrid clonal group of methicillin-resistant Staphylococcus aureus, ST239-MRSA-III.Q33523016
Characterization of a putative pathogenicity island from bovine Staphylococcus aureus encoding multiple superantigensQ33995165
Multilocus sequence typing of intercontinental bovine Staphylococcus aureus isolatesQ34042550
Genome sequence survey identifies unique sequences and key virulence genes with unusual rates of amino Acid substitution in bovine Staphylococcus aureusQ34125527
Microbial genome analysis: insights into virulence, host adaptation and evolutionQ34192048
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococciQ34409956
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.Q34617942
Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencingQ34630593
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational databaseQ34849651
How clonal is Staphylococcus aureus?Q35006020
Host defenses against Staphylococcus aureus infection require recognition of bacterial lipoproteinsQ35025079
Multilocus sequence typing of Staphylococcus aureus with DNA array technologyQ35155577
Neutral mutations and neutral substitutions in bacterial genomesQ35209355
Predominance of clones carrying Panton-Valentine leukocidin genes among methicillin-resistant Staphylococcus aureus strains isolated in Japanese hospitals from 1979 to 1985.Q35221053
Role of Staphylococcus aureus coagulase and clumping factor in pathogenesis of experimental endocarditisQ35455244
Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcerQ35608680
Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome compositionQ35906447
Characterization of Staphylococcus aureus isolates from buffalo, bovine, ovine, and caprine milk samples collected in Rio de Janeiro State, BrazilQ35913086
Molecular population genetic analysis of Staphylococcus aureus recovered from cows.Q36518530
Bacterial complement evasion.Q36550174
Surface adhesins of Staphylococcus aureusQ36607866
Living in a changing environment: insights into host adaptation in Neisseria meningitidis from comparative genomicsQ36850450
Genome-wide analysis of ruminant Staphylococcus aureus reveals diversification of the core genome.Q36933253
Effect of staphylococcal delta-toxin and bee venom peptide melittin on leukotriene induction and metabolism of human polymorphonuclear granulocytesQ36987288
Genetic requirements for Staphylococcus aureus abscess formation and persistence in host tissuesQ37355394
fdrtool: a versatile R package for estimating local and tail area-based false discovery ratesQ38426781
Structural comparison of three types of staphylococcal cassette chromosome mec integrated in the chromosome in methicillin-resistant Staphylococcus aureusQ39477045
Vbeta-dependent stimulation of bovine and human T cells by host-specific staphylococcal enterotoxinsQ39831123
Evolutionary genetics of the accessory gene regulator (agr) locus in Staphylococcus aureusQ40703014
Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineagesQ41919962
Characterization of the epidemic European fusidic acid-resistant impetigo clone of Staphylococcus aureus.Q41991408
A toxic shock syndrome toxin mutant of Staphylococcus aureus isolated by allelic replacement lacks virulence in a rabbit uterine modelQ42028642
Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genesQ42128186
Heterogeneity among methicillin-resistant Staphylococcus aureus from Italian pig finishing holdingsQ43242214
Inferring evolutionary trees with PAUP*.Q43688193
Molecular genetic typing reveals further insights into the diversity of animal-associated Staphylococcus aureusQ44027861
Prophages of Staphylococcus aureus Newman and their contribution to virulenceQ44603988
Staphylococcus aureus host specificity: comparative genomics of human versus animal isolates by multi-strain microarrayQ44628615
Enterotoxigenic Staphylococcus aureus in bulk milk in NorwayQ46550616
The phylogeny of Staphylococcus aureus - which genes make the best intra-species markers?Q48091620
Comparative analysis of the genomes of the temperate bacteriophages phi 11, phi 12 and phi 13 of Staphylococcus aureus 8325.Q48301371
Prophage, phiPV83-pro, carrying panton-valentine leukocidin genes, on the Staphylococcus aureus P83 chromosome: comparative analysis of the genome structures of phiPV83-pro, phiPVL, phi11, and other phagesQ48379657
Early expression of SCIN and CHIPS drives instant immune evasion by Staphylococcus aureus.Q50720726
Gene replacement in Staphylococcus carnosus and Staphylococcus xylosus.Q54565009
Pathogenomic Analysis of the Common BovineStaphylococcus aureusClone (ET3): Emergence of a Virulent Subtype with Potential Risk to Public HealthQ57248550
Fine-structure molecular epidemiological analysis of Staphylococcus aureus recovered from cowsQ57248617
Potential impact of recombination on sitewise approaches for detecting positive natural selectionQ59192521
Nucleotide Sequences and Biologic Properties of Toxic Shock Syndrome Toxin 1 from Ovine- and Bovine-Associated Staphylococcus aureusQ59807005
A simplified system for biotyping Staphylococcus aureus strains isolated from different animal speciesQ70355007
Comparison of Staphylococcus aureus recovered from personnel in a poultry hatchery and in broiler parent farms with those isolated from skeletal disease in broilersQ73055179
Delta-toxin from Staphylococcus aureus as a costimulator of human neutrophil oxidative burstQ73934781
LukM/LukF'-PV is the most active Staphylococcus aureus leukotoxin on bovine neutrophilsQ79747189
P921main subjectStaphylococcus aureusQ188121
genomicsQ222046
P304page(s)454-466
P577publication date2010-07-12
P1433published inGenome Biology and EvolutionQ15817736
P1476titleEvolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation
P478volume2

Reverse relations

cites work (P2860)
Q91742775A multihost bacterial pathogen overcomes continuous population bottlenecks to adapt to new host species
Q34055281A novel core genome-encoded superantigen contributes to lethality of community-associated MRSA necrotizing pneumonia
Q48105765A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination
Q34463037A single natural nucleotide mutation alters bacterial pathogen host tropism
Q34530052An approach to identifying drug resistance associated mutations in bacterial strains
Q44844148Animal and human Staphylococcus aureus associated clonal lineages and high rate of Staphylococcus pseudintermedius novel lineages in Spanish kennel dogs: predominance of S. aureus ST398.
Q38028617Are all meticillin-resistant Staphylococcus aureus (MRSA) equal in all hosts? Epidemiological and genetic comparison between animal and human MRSA.
Q47557117Bacterial pathogen emergence required more than direct contact with a novel passerine host
Q52319568Basis of Virulence in Enterotoxin-Mediated Staphylococcal Food Poisoning.
Q28392541Carriage of Staphylococcus aureus by free-living wild animals in Spain
Q35610974Characterization of Insertion Sequence ISSau2 in the Human and Livestock-Associated Staphylococcus aureus
Q34488789Characterization of Staphylococcus aureus isolates from faecal samples of the Straw-Coloured Fruit Bat (Eidolon helvum) in Obafemi Awolowo University (OAU), Nigeria.
Q34983848Characterization of a mouse-adapted Staphylococcus aureus strain
Q21266701Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae
Q34336328Comparative genotypic and phenotypic characterisation of methicillin-resistant Staphylococcus aureus ST398 isolated from animals and humans
Q34482234Comparative host specificity of human- and pig- associated Staphylococcus aureus clonal lineages
Q35848477Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel
Q40339297DNA target recognition domains in the Type I restriction and modification systems of Staphylococcus aureus
Q43590312Detection of methicillin-susceptible Staphylococcus aureus ST398 and ST133 strains in gut microbiota of healthy humans in Spain.
Q43167682Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota
Q38550627Draft Genome Sequences of Staphylococcus aureus Strains Isolated from Subclinical Bovine Mastitis in Brazil.
Q30420650Evolutionary blueprint for host- and niche-adaptation in Staphylococcus aureus clonal complex CC30.
Q36010997Examination of the Staphylococcus aureus nitric oxide reductase (saNOR) reveals its contribution to modulating intracellular NO levels and cellular respiration
Q91198786Exfoliative toxin E, a new Staphylococcus aureus virulence factor with host-specific activity
Q34503012Fine-tuned characterization of Staphylococcus aureus Newbould 305, a strain associated with mild and chronic mastitis in bovines.
Q58037418Gene exchange drives the ecological success of a multi-host bacterial pathogen
Q36363544Genome sequence of Staphylococcus aureus Newbould 305, a strain associated with mild bovine mastitis
Q35095936Genome sequences of two Staphylococcus aureus ovine strains that induce severe (strain O11) and mild (strain O46) mastitis
Q57001306Genomic and proteomic characterization of Staphylococcus aureus mastitis isolates of bovine origin
Q37354188Genomic evolution of the pathogenic Wolbachia strain, wMelPop
Q38636002Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England
Q35046422Genomics, the origins of agriculture, and our changing microbe-scape: time to revisit some old tales and tell some new ones
Q37672266Global distribution and diversity of ovine-associated Staphylococcus aureus.
Q34459559High diversity of genetic lineages and virulence genes in nasal Staphylococcus aureus isolates from donkeys destined to food consumption in Tunisia with predominance of the ruminant associated CC133 lineage
Q27305822High throughput multiple locus variable number of tandem repeat analysis (MLVA) of Staphylococcus aureus from human, animal and food sources
Q27322743Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset
Q34625631Human-to-bovine jump of Staphylococcus aureus CC8 is associated with the loss of a β-hemolysin converting prophage and the acquisition of a new staphylococcal cassette chromosome
Q36255105Identification of LukPQ, a novel, equid-adapted leukocidin of Staphylococcus aureus
Q50134160Identification of a Staphylococcal Complement Inhibitor with broad host specificity in equid S. aureus strains.
Q34544939Identification of gene clusters associated with host adaptation and antibiotic resistance in Chinese Staphylococcus aureus isolates by microarray-based comparative genomics
Q44108223Identification of predominant SNPs as a novel method for genotyping bovine Staphylococcus aureus isolates
Q57801442In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans
Q36598960Inhibition of Staphylococcus aureus invasion into bovine mammary epithelial cells by contact with live Lactobacillus casei
Q37580020Isolation and characterization of Staphylococcus aureus strains from a Paso del Norte dairy.
Q47912473Knowledge gaps and research priorities in Staphylococcus aureus mastitis control.
Q40209705Laboratory Mice Are Frequently Colonized with Staphylococcus aureus and Mount a Systemic Immune Response-Note of Caution for In vivo Infection Experiments
Q64056387Langerhans Cells Sense Wall Teichoic Acid through Langerin To Induce Inflammatory Responses
Q42668847Longitudinal study of Staphylococcus aureus colonization and infection in a cohort of swine veterinarians in the United States
Q37441162LukMF' is the major secreted leukocidin of bovine Staphylococcus aureus and is produced in vivo during bovine mastitis
Q35875856Methicillin-Resistant Staphylococcus aureus Associated with Animals and Its Relevance to Human Health
Q33675443Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.
Q33744758Molecular Epidemiology of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus in the Ovine Dairy Chain and in Farm-Related Humans
Q93004713Molecular Epidemiology of Methicillin-Susceptible and Methicillin-Resistant Staphylococcus aureus in Wild, Captive and Laboratory Rats: Effect of Habitat on the Nasal S. aureus Population
Q59806392Molecular basis determining species specificity for TLR2 inhibition by staphylococcal superantigen-like protein 3 (SSL3)
Q34077854Molecular basis of virulence in Staphylococcus aureus mastitis
Q36231339Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication
Q58440361New host shift from human to cows within Staphylococcus aureus involved in bovine mastitis and nasal carriage of animal's caretakers
Q58875783Occurrence and distribution of Staphylococcus aureus lineages among zoo animals
Q50233299Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli
Q35482778Phage-mediated horizontal transfer of a Staphylococcus aureus virulence-associated genomic island
Q41285174Phosphorylation controls the functioning of Staphylococcus aureus isocitrate dehydrogenase--favours biofilm formation
Q35622545Population biology of Gram-positive pathogens: high-risk clones for dissemination of antibiotic resistance
Q89422972Population genomics of bacterial host adaptation
Q39021895Prevalence, antibiotic resistance, virulence traits and genetic lineages of Staphylococcus aureus in healthy sheep in Tunisia.
Q59136818Rapidly evolving changes and gene loss associated with host switching in Corynebacterium pseudotuberculosis
Q33792993Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus
Q39028194Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
Q41883123RinA controls phage-mediated packaging and transfer of virulence genes in Gram-positive bacteria
Q33916269Sequence diversities of serine-aspartate repeat genes among Staphylococcus aureus isolates from different hosts presumably by horizontal gene transfer
Q46236730Severe infections emerge from commensal bacteria by adaptive evolution
Q38964326Staphylococcus aureus Isolates from Goat and Sheep Milk Seem to Be Closely Related and Differ from Isolates Detected from Bovine Milk
Q34332882Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA).
Q35191639Staphylococcus aureus host range and human-bovine host shift
Q28066364Staphylococcus aureus in Animals and Food: Methicillin Resistance, Prevalence and Population Structure. A Review in the African Continent
Q34639298Staphylococcus aureus seroproteomes discriminate ruminant isolates causing mild or severe mastitis
Q34743940Staphylococcus aureus-induced G2/M phase transition delay in host epithelial cells increases bacterial infective efficiency
Q64973315Study the Features of 57 Confirmed CRISPR Loci in 38 Strains of Staphylococcus aureus.
Q39755634The Type I Restriction Enzymes as Barriers to Horizontal Gene Transfer: Determination of the DNA Target Sequences Recognised by Livestock-Associated Methicillin-Resistant Staphylococcus aureus Clonal Complexes 133/ST771 and 398.
Q35494166The distribution of mobile genetic elements (MGEs) in MRSA CC398 is associated with both host and country
Q83179083Varying fitness cost associated with resistance to fluoroquinolones governs clonal dynamic of methicillin-resistant Staphylococcus aureus
Q24633558Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC
Q28595903Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe
Q35940841Zoonotic agents in small ruminants kept on city farms in southern Germany.
Q36397203whole-genome sequence of livestock-associated st398 methicillin-resistant staphylococcus aureus Isolated from Humans in Canada

Search more.