De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae).

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De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). is …
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scholarly articleQ13442814

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P819ADS bibcode2012PLoSO...742082Z
P356DOI10.1371/JOURNAL.PONE.0042082
P932PMC publication ID3419236
P698PubMed publication ID22916120
P5875ResearchGate publication ID230724246

P50authorDe Zhu LiQ21513403
P2093author name stringLei Zhao
Zachary Larson-Rabin
Xue-Mei Zhang
Zhen-Hua Guo
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SOAP2: an improved ultrafast tool for short read alignmentQ28247469
It's time to flower: the genetic control of flowering timeQ28254059
Comes a timeQ37234722
Regulation of flowering in temperate cereals.Q37386181
At the end of the day: a common molecular mechanism for photoperiod responses in plants?Q37469710
A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in ArabidopsisQ37513574
The circadian system in higher plantsQ37539967
Vernalization: winter and the timing of flowering in plantsQ37540170
Flowering time control and applications in plant breedingQ37589085
Gibberellin and jasmonate crosstalk during stamen developmentQ37659228
bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in ArabidopsisQ38346003
Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation.Q38520376
A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathwayQ39013733
Identification and characterization of two bamboo (Phyllostachys praecox) AP1/SQUA-like MADS-box genes during floral transitionQ39180998
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarrayQ39444664
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoterQ39532162
The ABCs of floral homeotic genesQ40624690
leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower developmentQ42627903
Identification of a methyl jasmonate-responsive region in the promoter of a lipoxygenase 1 gene expressed in barley grain.Q42653557
Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display methodQ44012294
Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutantQ44216724
An extensive microarray analysis of AAL-toxin-induced cell death in Arabidopsis thaliana brings new insights into the complexity of programmed cell death in plants.Q44894667
Molecular events in senescing Arabidopsis leavesQ44992341
Functional conservation of the plant EMBRYONIC FLOWER2 gene between bamboo and Arabidopsis.Q45361791
HRT gene function requires interaction between a NAC protein and viral capsid protein to confer resistance to turnip crinkle virusQ45740107
Genome-wide analysis of spatial gene expression in Arabidopsis flowers.Q46274579
Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in ArabidopsisQ46324990
Transcriptional programs of early reproductive stages in ArabidopsisQ47214390
Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thalianaQ47334339
liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesisQ48052957
Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1.Q48073077
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencingQ48080987
CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of ArabidopsisQ48083169
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening.Q48086140
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.Q48211766
The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in ArabidopsisQ48228437
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Modulation of floral development by a gibberellin-regulated microRNAQ28269394
Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of alpha-Amy2 genesQ28271958
The AP2/EREBP family of plant transcription factorsQ28278141
Regulation and identity of florigen: FLOWERING LOCUS T moves center stageQ28278190
Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studiesQ28742616
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchQ29547461
The significance of digital gene expression profilesQ29614357
WEGO: a web tool for plotting GO annotationsQ29616658
ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequencesQ29616755
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasetsQ29618029
Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq.Q30520648
Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis.Q30646171
De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technologyQ30993080
De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plantsQ31016747
Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analysesQ31029661
Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stressQ33197207
Cloning and characterization of a bamboo LEAFY HULL STERILE1 homologous geneQ33262207
A novel gibberellin-induced gene from rice and its potential regulatory role in stem growthQ33334444
The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in ArabidopsisQ33338525
Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.).Q33340280
Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativaQ33341862
The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in ArabidopsisQ33345219
Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architectureQ33345261
Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiodQ33345990
Flowering time regulation produces much fruitQ33346176
Repression of flowering by the miR172 target SMZ.Q33347386
GIGANTEA directly activates Flowering Locus T in Arabidopsis thalianaQ33351687
Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.Q33351917
A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.Q33367564
The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundariesQ33367619
Mutations in the PERIANTHIA gene of Arabidopsis specifically alter floral organ number and initiation pattern.Q33367630
Activation of floral meristem identity genes in ArabidopsisQ33367868
Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transitionQ33368257
ETTIN patterns the Arabidopsis floral meristem and reproductive organsQ33368407
A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.Q50492185
Arabidopsis AtSPL14, a plant-specific SBP-domain transcription factor, participates in plant development and sensitivity to fumonisin B1.Q50778289
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Q51875532
Mechanisms of floral induction in grasses: something borrowed, something new.Q51943081
The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development.Q52027956
AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana.Q52038799
Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.Q52062295
SPL8, an SBP-box gene that affects pollen sac development in Arabidopsis.Q52107209
A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes.Q52127098
Identification of class B and class C floral organ identity genes from rice plants.Q52228677
MAP kinase signalling cascade in Arabidopsis innate immunity.Q52594626
Wasp gene expression supports an evolutionary link between maternal behavior and eusociality.Q52684390
Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor.Q53593374
Regulation of flowering time by Arabidopsis MSI1Q57831534
Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomatoQ60297599
Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptomeQ61679982
Comparative analysis of the Arabidopsis pollen transcriptomeQ73522003
Ecotype-Specific Expression of a Flowering Mutant Phenotype in Arabidopsis thalianaQ74776510
GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthersQ79771643
The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thalianaQ81859844
Inheritance of indeterminate growth in maizeQ82180281
Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.Q35333054
Regulation of disease resistance pathways by AP2/ERF transcription factors.Q35825054
DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana.Q35846307
WRKY transcription factors: from DNA binding towards biological functionQ35874374
NAC transcription factors: structurally distinct, functionally diverseQ36039778
A Myb homologue, ATR1, activates tryptophan gene expression in ArabidopsisQ36095364
The timing of developmental transitions in plantsQ36483601
Photoperiodic control of flowering: not only by coincidenceQ36621032
Diverse roles for MADS box genes in Arabidopsis developmentQ36680214
Control of flowering time in temperate cereals: genes, domestication, and sustainable productivityQ36786222
Cloning and characterization of tomato leaf senescence-related cDNAsQ36857813
RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in riceQ36861616
FLC or not FLC: the other side of vernalizationQ37129255
Function annotation of an SBP-box gene in Arabidopsis based on analysis of co-expression networks and promotersQ37143165
The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals.Q37200135
A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA.Q33368522
The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maizeQ33368639
Insights into corn genes derived from large-scale cDNA sequencingQ33378109
Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencingQ33467101
Vernalization in cerealsQ33480658
Bioinformatics analysis of small RNAs in plants using next generation sequencing technologiesQ33508597
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discoveryQ33541331
Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grassesQ33564210
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex typesQ33610951
Understanding bamboo flowering based on large-scale analysis of expressed sequence tags.Q33612458
De novo characterization of a whitefly transcriptome and analysis of its gene expression during development.Q33614384
Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fishQ33657379
Transcriptome analysis of the brown planthopper Nilaparvata lugensQ33769404
De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traitsQ33786899
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).Q33792660
Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)Q33817501
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds.Q33830996
Genome-scale transcriptome analysis of the desert poplar, Populus euphratica.Q33852822
The WRKY superfamily of plant transcription factors.Q33901053
Development of floral organ identity: stories from the MADS houseQ33932078
Genetics of dominant gibberellin-insensitive dwarfism in maizeQ33955256
Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencingQ33959386
De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genesQ34094578
Analysis of transcriptome differences between resistant and susceptible strains of the citrus red mite Panonychus citri (Acari: Tetranychidae).Q34097670
De novo transcriptome of safflower and the identification of putative genes for oleosin and the biosynthesis of flavonoidsQ34170401
Role of AP2/EREBP transcription factors in gene regulation during abiotic stressQ34286088
Polarized cell growth in higher plants.Q34425154
The origin of the naked grains of maizeQ34440195
Profiling DNA methylomes from microarray to genome-scale sequencingQ34446843
The molecular basis of vernalization-induced flowering in cereals.Q34650358
Control of flowering time: interacting pathways as a basis for diversityQ34667519
The mechanics of cell fate determination in petalsQ34701677
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root developmentQ35208219
A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in ArabidopsisQ35315181
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue8
P407language of work or nameEnglishQ1860
P921main subjectPoaceaeQ43238
transcriptomeQ252857
Dendrocalamus latiflorusQ11175832
P304page(s)e42082
P577publication date2012-08-14
P1433published inPLOS OneQ564954
P1476titleDe novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)
P478volume7

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