Genome-wide identification of viral and host transcripts targeted by viral siRNAs in Vitis vinifera.

scientific article

Genome-wide identification of viral and host transcripts targeted by viral siRNAs in Vitis vinifera. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1364-3703.2012.00828.X
P932PMC publication ID6638717
P698PubMed publication ID22947170
P5875ResearchGate publication ID230796130

P50authorVitantonio PantaleoQ42265060
Giorgio GambinoQ57902811
P2093author name stringLaura Miozzi
Jozsef Burgyan
P2860cites workA high quality draft consensus sequence of the genome of a heterozygous grapevine varietyQ21144402
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaQ22122214
Antiviral immunity directed by small RNAsQ24656063
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradomeQ24656974
RNA interference is mediated by 21- and 22-nucleotide RNAsQ27860764
MicroRNAs: genomics, biogenesis, mechanism, and functionQ27861070
The Saccharomyces cerevisiae TIF6 gene encoding translation initiation factor 6 is required for 60S ribosomal subunit biogenesisQ27930710
Global analysis of yeast endosomal transport identifies the vps55/68 sorting complexQ27936769
The Saccharomyces cerevisiae homologue of mammalian translation initiation factor 6 does not function as a translation initiation factorQ27939061
A microRNA in a multiple-turnover RNAi enzyme complexQ28131835
Identification of signal peptide peptidase, a presenilin-type aspartic proteaseQ28206228
Origin, biogenesis, and activity of plant microRNAsQ28236171
RNA silencing in plantsQ28282572
Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defenseQ28766178
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchQ29547461
Argonaute proteins: key players in RNA silencingQ29614714
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNAQ29618382
Complete nucleotide sequence and genome organization of Grapevine fleck virusQ30656555
Maculavirus, a new genus of plant viruses.Q30718617
PsbY, a novel manganese-binding, low-molecular-mass protein associated with photosystem II.Q31966044
Global identification of microRNA-target RNA pairs by parallel analysis of RNA endsQ33341604
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targetsQ33385410
Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesisQ33420820
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysisQ33540822
Double-stranded RNA-activated protein kinase (PKR) is negatively regulated by 60S ribosomal subunit protein L18Q33868563
Viral small interfering RNAs target host genes to mediate disease symptoms in plantsQ33900652
A viral satellite RNA induces yellow symptoms on tobacco by targeting a gene involved in chlorophyll biosynthesis using the RNA silencing machinery.Q33900658
Widespread translational inhibition by plant miRNAs and siRNAsQ34011733
Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation.Q34136640
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotideQ34308999
The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.Q34762102
Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virusQ34791544
RNA interference-inducing hairpin RNAs in plants act through the viral defence pathwayQ35191217
RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteinsQ35221138
RNAi-associated ssRNA-specific ribonucleases in Tombusvirus P19 mutant-infected plants and evidence for a discrete siRNA-containing effector complexQ35616412
Nomenclature and functions of RNA-directed RNA polymerasesQ36394550
Plant ARGONAUTES.Q37175030
Roles of plant small RNAs in biotic stress responsesQ37515393
RNA silencing: an antiviral mechanismQ37683091
The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological functionQ37702833
RNA-based antiviral immunityQ37779725
New insights into S2P signaling cascades: regulation, variation, and conservation.Q37788073
Signaling in induced resistanceQ37801997
Form, function, and regulation of ARGONAUTE proteins.Q37823803
Identification of a Plant-Encoded Analog of PKR, the Mammalian Double-Stranded RNA-Dependent Protein KinaseQ41329827
Sequence analysis of the 3' end of three Grapevine fleck virus-like viruses from grapevine.Q42605694
PatMaN: rapid alignment of short sequences to large databasesQ42647523
Molecular bases of viral RNA targeting by viral small interfering RNA-programmed RISC.Q42797213
Molecular insights into mechanisms of intramembrane proteolysis through signal peptide peptidase (SPP).Q43101309
Cymbidium ringspot virus harnesses RNA silencing to control the accumulation of virus parasite satellite RNA.Q43242592
Characterization of expression dynamics of WOX homeodomain transcription factors during somatic embryogenesis in Vitis viniferaQ43547666
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unctionQ44314640
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targetsQ44984049
Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevineQ45180748
Spatial analysis of arabidopsis thaliana gene expression in response to Turnip mosaic virus infection.Q45405229
Nucleotide sequence and genome structure of grapevine rupestris stem pitting associated virus-1 reveal similarities to apple stem pitting virusQ45754111
Foveavirus, a new plant virus genusQ45754485
A20/AN1 zinc-finger domain-containing proteins in plants and animals represent common elements in stress responseQ46718586
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressorsQ46907096
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.Q50728273
The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thalianaQ56985895
Simultaneous detection of nine grapevine viruses by multiplex reverse transcription-polymerase chain reaction with coamplification of a plant RNA as internal controlQ79683833
DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signalQ81449458
P433issue1
P921main subjectVitis viniferaQ30046
P304page(s)30-43
P577publication date2012-09-04
P1433published inMolecular Plant PathologyQ11937220
P1476titleGenome-wide identification of viral and host transcripts targeted by viral siRNAs in Vitis vinifera
P478volume14

Reverse relations

cites work (P2860)
Q58573450A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato
Q26799174Antiviral roles of plant ARGONAUTES
Q26776135Biogenesis, Function, and Applications of Virus-Derived Small RNAs in Plants
Q28829855Characterization of a Novel Polerovirus Infecting Maize in China
Q35167071Characterization of small interfering RNAs derived from Sugarcane mosaic virus in infected maize plants by deep sequencing
Q33364041Characterization of virus-derived small interfering RNAs in Apple stem grooving virus-infected in vitro-cultured Pyrus pyrifolia shoot tips in response to high temperature treatment
Q37150359Cotton Leaf Curl Multan Virus-Derived Viral Small RNAs Can Target Cotton Genes to Promote Viral Infection
Q64951974Cross-Kingdom Small RNAs Among Animals, Plants and Microbes.
Q40373973Deep sequencing analysis reveals a TMV mutant with a poly(A) tract reduces host defense responses in Nicotiana benthamiana
Q37458467Differential response of cassava genotypes to infection by cassava mosaic geminiviruses
Q59355821Dissecting interplays between Vitis vinifera L. and grapevine virus B (GVB) under field conditions
Q99567456Endogenous activated siRNAs in virus-infected Brassicaceae crops show a common host gene silencing pattern affecting photosynthesis and stress-response
Q59132097Exploring the Diversity of Mechanisms Associated With Plant Tolerance to Virus Infection
Q91026917From current knowledge to best practice: A primer on viral diagnostics using deep sequencing of virus-derived small interfering RNAs (vsiRNAs) in infected plants
Q38150077Geminiviruses: masters at redirecting and reprogramming plant processes
Q42347229Grand Challenge in Plant Virology: Understanding the Impact of Plant Viruses in Model Plants, in Agricultural Crops, and in Complex Ecosystems
Q59235779High-Throughput Sequencing: Advantages Beyond Virus Identification
Q67224896Highly efficacious antiviral protection of plants by small interfering RNAs identified in vitro
Q26772322Horizontal Transfer of Small RNAs to and from Plants
Q90482940In silico identification and computational characterization of endogenous small interfering RNAs from diverse grapevine tissues and stages
Q37363999MiR1918 enhances tomato sensitivity to Phytophthora infestans infection
Q92111571Molecular characterization of virus-derived small RNAs in Nicotiana benthamiana plants infected with tobacco curly shoot virus and its β satellite
Q34377957RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence
Q57024827Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus
Q38139003Small RNAs in plant defense responses during viral and bacterial interactions: similarities and differences
Q36732210Synergistic infection of two viruses MCMV and SCMV increases the accumulations of both MCMV and MCMV-derived siRNAs in maize
Q37237429The Tomato Spotted Wilt Virus Genome Is Processed Differentially in its Plant Host Arachis hypogaea and its Thrips Vector Frankliniella fusca.
Q40184838Transcriptome-wide identification of host genes targeted by tomato spotted wilt virus-derived small interfering RNAs
Q102369225Turnip mosaic virus in oilseed rape activates networks of sRNA-mediated interactions between viral and host genomes
Q59350010Virus-Derived Small Interfering RNAs Affect the Accumulations of Viral and Host Transcripts in Maize