Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression

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Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression is …
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scholarly articleQ13442814

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P356DOI10.1186/1471-2164-13-519
P932PMC publication ID3505472
P698PubMed publication ID23031507
P5875ResearchGate publication ID231860755

P50authorOlaf KniemeyerQ40961116
Marco GrothQ57323639
Axel A BrakhageQ70220634
Reinhard GuthkeQ84264810
P2093author name stringSebastian Müller
Clara Baldin
Vito Valiante
P2860cites workGenomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatusQ21972844
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatusQ22065252
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Systemic Fungal Infections Caused by Aspergillus Species: Epidemiology, Infection Process and Virulence DeterminantsQ22305789
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurementsQ24597089
Accurate whole human genome sequencing using reversible terminator chemistryQ24641887
Pathogenesis of Aspergillus fumigatus in Invasive AspergillosisQ24650911
TopHat: discovering splice junctions with RNA-SeqQ24655505
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arraysQ24655562
Advances in Aspergillus secondary metabolite research in the post-genomic eraQ26823169
Comparative analysis of proteome and transcriptome variation in mouseQ30431821
Integrative analysis of the heat shock response in Aspergillus fumigatusQ30493084
Genetic basis of proteome variation in yeastQ33303371
Two-dimensional proteome reference maps for the human pathogenic filamentous fungus Aspergillus fumigatusQ33413884
baySeq: empirical Bayesian methods for identifying differential expression in sequence count dataQ33653650
Heptahelical receptors GprC and GprD of Aspergillus fumigatus Are essential regulators of colony growth, hyphal morphogenesis, and virulenceQ33946473
CADRE: the Central Aspergillus Data REpository 2012Q34073654
Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencingQ34080071
The akuB(KU80) mutant deficient for nonhomologous end joining is a powerful tool for analyzing pathogenicity in Aspergillus fumigatusQ34334002
AUGUSTUS: ab initio prediction of alternative transcriptsQ34548015
Analysis of the Aspergillus fumigatus proteome reveals metabolic changes and the activation of the pseurotin A biosynthesis gene cluster in response to hypoxiaQ34966268
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resourcesQ35631122
Global transcriptome changes underlying colony growth in the opportunistic human pathogen Aspergillus fumigatusQ35666165
Systems biology of fungal infection.Q35864807
The MAP kinase MpkA controls cell wall integrity, oxidative stress response, gliotoxin production and iron adaptation in Aspergillus fumigatusQ39568535
Power of deep sequencing and agilent microarray for gene expression profiling studyQ39877836
Comparative proteome, transcriptome, and genome analysis of a gonadal and an extragonadal germ cell tumor cell lineQ39958996
Functional genomic profiling of Aspergillus fumigatus biofilm reveals enhanced production of the mycotoxin gliotoxinQ42964826
Transannular disulfide formation in gliotoxin biosynthesis and its role in self-resistance of the human pathogen Aspergillus fumigatusQ42996001
The MpkA MAP kinase module regulates cell wall integrity signaling and pyomelanin formation in Aspergillus fumigatus.Q43284053
Genome-wide maps of mono- and di-nucleosomes of Aspergillus fumigatusQ43469143
The mitogen-activated protein kinase MpkA of Aspergillus fumigatus regulates cell wall signaling and oxidative stress responseQ46480631
FungiFun: A web-based application for functional categorization of fungal genes and proteinsQ82442540
P407language of work or nameEnglishQ1860
P921main subjectAspergillus fumigatusQ134359
transcriptomeQ252857
Ortholog of A. nidulans FGSC A4 : AN0391, AN7222, A. fumigatus Af293 : Afu2g01760, A. niger CBS 513.88 : An03g06670, An15g07300 and A. oryzae RIB40 : AO090010000045/aoiD, AO090102000259Q61486400
RNA polymerase IQ61488920
Putative aspartate aminotransferaseQ61489063
Putative translation elongation factor EF-TuQ61496727
Putative glycogen phosphorylaseQ61497666
nonribosomal peptide synthetase 4Q61528109
Immunoreactive proteinQ61544827
mitogen-activated protein kinaseQ61554808
Has domain(s) with predicted catalytic activity and role in metabolic processQ61555420
nonribosomal peptide synthetase 11Q61579616
non-reducing polyketide synthase pyr2Q61581860
nonribosomal peptide synthetase 13Q61588331
fumagillin biosynthesis polyketide synthaseQ61588888
stereoselective keto-reductaseQ61589302
Protein similar to nonribosomal peptide synthases (NRPS-like), encoded in a predicted secondary metabolite gene clusterQ61590691
Putative fumarate reductaseQ61593065
P304page(s)519
P577publication date2012-10-02
P1433published inBMC GenomicsQ15765854
P1476titleComparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression
P478volume13

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