Current status of viroid taxonomy

scientific article

Current status of viroid taxonomy is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1042896248
P356DOI10.1007/S00705-014-2200-6
P698PubMed publication ID25216773
P5875ResearchGate publication ID265648224

P50authorFrancesco Di SerioQ30509918
Ricardo FloresQ45460978
John W. RandlesQ52582232
Vicente PallasQ59670894
K VerhoevenQ67260962
P2093author name stringT Sano
G Vidalakis
R A Owens
S-F Li
P2860cites workMEGA6: Molecular Evolutionary Genetics Analysis version 6.0Q24498082
Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNAQ24564421
Circular RNAs: relics of precellular evolution?Q24602170
Characterization of the RNA motif responsible for the specific interaction of potato spindle tuber viroid RNA (PSTVd) and the tomato protein Virp1Q24682495
Origins and Mechanisms of miRNAs and siRNAsQ27860822
Potato spindle tuber "virus". IV. A replicating, low molecular weight RNAQ28250149
ViroidsQ28292782
Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interactionQ30877483
The fittest versus the flattest: experimental confirmation of the quasispecies effect with subviral pathogens.Q33267906
Deep sequencing of the small RNAs derived from two symptomatic variants of a chloroplastic viroid: implications for their genesis and for pathogenesisQ33511754
Association of a novel DNA virus with the grapevine vein-clearing and vine decline syndrome.Q33893137
Nucleotide sequence and secondary structure of potato spindle tuber viroidQ34055713
A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot grisQ34061356
Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithmQ34161886
Australian grapevine viroid--evidence for extensive recombination between viroidsQ34325266
Viroids and viroid-host interactions.Q34439978
Tomato chlorotic dwarf viroid: an evolutionary link in the origin of pospiviroidsQ34506000
Dahlia latent viroid: a recombinant new species of the family Pospiviroidae posing intriguing questions about its origin and classification.Q34518760
A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.Q35784814
The question of Citrus viroid IV as a cocadviroidQ36094420
Viroid RNA redirects host DNA ligase 1 to act as an RNA ligaseQ36187371
Identification of multiple structural domains regulating viroid pathogenicityQ37266771
Mexican papita viroid: putative ancestor of crop viroids.Q37350729
The biology of viroid-host interactionsQ37462884
Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolutionQ37522980
Plus and minus RNAs of peach latent mosaic viroid self-cleave in vitro via hammerhead structuresQ37598994
Viroid-specific small RNA in plant diseaseQ38012335
Viroids: how to infect a host and cause disease without encoding proteins.Q38022085
Viroids and hepatitis delta virusQ38039006
Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structureQ38315230
Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequencesQ40539693
Correlation between bending of the VM region and pathogenicity of different Potato Spindle Tuber Viroid strainsQ41998471
Infectious cDNA clones of four viroids in Coleus blumei and molecular characterization of their progenyQ42238604
Characterization of a new apscaviroid from American persimmonQ42285860
Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virusQ43676461
Interplay between viroid-induced pathogenesis and RNA silencing pathways.Q43729335
Testing the extent of sequence similarity among viroids, satellite RNAs, and hepatitis delta virusQ45744805
Host-directed processing of Citrus exocortis viroidQ46320882
Scientific Opinion on the assessment of the risk of solanaceous pospiviroids for the EU territory and the identification and evaluation of risk management optionsQ47150483
Successive accumulation of two size classes of viroid-specific small RNA in potato spindle tuber viroid-infected tomato plantsQ47260622
In vitro-generated 'inverse' chimeric Coleus blumei viroids evolve in vivo into infectious RNA repliconsQ48058405
Mexican papita viroid and tomato planta macho viroid belong to a single species in the genus Pospiviroid.Q48059229
Coleus blumei viroid 6: a new tentative member of the genus Coleviroid derived from natural genome shufflingQ48069986
Identification and characterization of a new coleviroid (CbVd-5).Q48071753
Potato spindle tuber viroid: the simplicity paradox resolved?Q48690695
Phylogenetic analysis of viroid and viroid-like satellite RNAs from plants: a reassessmentQ48738401
A proposed scheme for viroid classification and nomenclatureQ48769885
A genomic map of viroid RNA motifs critical for replication and systemic trafficking.Q51967780
Identification in eggplant of a variant of citrus exocortis viroid (CEVd) with a 96 nucleotide duplication in the right terminal region of the rod-like secondary structure.Q54744681
Viroids: The Noncoding GenomesQ57309440
P433issue12
P1104number of pages12
P304page(s)3467-3478
P577publication date2014-09-13
P1433published inArchives of VirologyQ2860564
P1476titleCurrent status of viroid taxonomy
P478volume159

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cites work (P2860)
Q92543595A Highly Sensitive Method to Detect Avocado Sunblotch Viroid for the Maintenance of Infection-Free Avocado Germplasm Collections
Q46284278A novel citrus viroid found in Australia, tentatively named citrus viroid VII.
Q30953847A pospiviroid from symptomless portulaca plants closely related to iresine viroid 1.
Q39192416A single base pair in the right terminal domain of tomato planta macho viroid is a virulence determinant factor on tomato
Q47547778A viroid-derived system to produce large amounts of recombinant RNA in Escherichia coli
Q53692686Alterations of the viroid regions that interact with the host defense genes attenuate viroid infection in host plant.
Q90622794Apple chlorotic fruit spot viroid: a putative new pathogenic viroid on apple characterized by next-generation sequencing
Q52671674Apple hammerhead viroid-like RNA is a bona fide viroid: Autonomous replication and structural features support its inclusion as a new member in the genus Pelamoviroid.
Q60952665Chrysanthemum Stunt Viroid Resistance in
Q36356772Circular RNAs with hammerhead ribozymes encoded in eukaryotic genomes: The enemy at home.
Q92492947Citrus exocortis viroid causes ribosomal stress in tomato plants
Q40103598Classification of the Pospiviroidae based on their structural hallmarks.
Q47169470Comparative Analysis of Chrysanthemum Stunt Viroid Accumulation and Movement in Two Chrysanthemum (Chrysanthemum morifolium) Cultivars with Differential Susceptibility to the Viroid Infection
Q36226523Complete Genome Sequences of Grapevine Yellow Speckle Viroid 1 and Hop Stunt Viroid Assembled from the Transcriptome of Ixeridium dentatum Plants
Q91823266Dendrobium viroid, a new monocot-infecting apscaviroid
Q57812959Genome-Wide Transcriptomic Analysis Reveals Insights into the Response to (CBCVd) in Hop ( L.)
Q91714698High-Throughput Sequencing Analysis of Small RNAs Derived from Coleus Blumei Viroids
Q92462405Highly efficient construction of infectious viroid-derived clones
Q38672168Identification of a viroid-like RNA in a lychee Transcriptome Shotgun Assembly
Q35944046Insight on Genes Affecting Tuber Development in Potato upon Potato spindle tuber viroid (PSTVd) Infection
Q42271001Modelling the three-dimensional structure of the right-terminal domain of pospiviroids
Q40999118Molecular dissection of a dahlia isolate of potato spindle tuber viroid inciting a mild symptoms in tomato
Q40193228Molecular diversity among viroids infecting chrysanthemum in India
Q28076019Next-Generation Sequencing and Genome Editing in Plant Virology
Q58702436Pospiviroid Infection of Tomato Regulates the Expression of Genes Involved in Flower and Fruit Development
Q40085082Potato spindle tuber viroid infection triggers degradation of chloride channel protein CLC-b-like and Ribosomal protein S3a-like mRNAs in tomato plants
Q90240551RNAi-Mediated Down-Regulation of Dicer-Like 2 and 4 Changes the Response of 'Moneymaker' Tomato to Potato Spindle Tuber Viroid Infection from Tolerance to Lethal Systemic Necrosis, Accompanied by Up-Regulation of miR398, 398a-3p and Production of Ex
Q64882701Reassessment of Viroid RNA Cytosine Methylation Status at the Single Nucleotide Level.
Q90837042SERRATE, a miRNA biogenesis factor, affects viroid infection in Nicotiana benthamiana and Nicotiana tabacum
Q37611139Sequence variability of Chrysanthemum stunt viroid in different chrysanthemum cultivars
Q40625231Small RNA Derived from the Virulence Modulating Region of the Potato spindle tuber viroid Silences callose synthase Genes of Tomato Plants.
Q64916593Suppression of RNA-Dependent RNA Polymerase 6 Favors the Accumulation of Potato Spindle Tuber Viroid in Nicotiana Benthamiana.
Q64953483Surveys in the Chrysanthemum Production Areas of Brazil and Colombia Reveal That Weeds Are Potential Reservoirs of Chrysanthemum Stunt Viroid.
Q92641737Symptomatic plant viroid infections in phytopathogenic fungi
Q55085341Time-Course Microarray Analysis Reveals Differences between Transcriptional Changes in Tomato Leaves Triggered by Mild and Severe Variants of Potato Spindle Tuber Viroid.
Q40094383Viability and genetic stability of potato spindle tuber viroid mutants with indels in specific loops of the rod-like secondary structure
Q58603481Viroid Diseases in Pome and Stone Fruit Trees and Koch's Postulates: A Critical Assessment
Q30316229Viroids, infectious long non-coding RNAs with autonomous replication
Q38367556Viroids, the simplest RNA replicons: How they manipulate their hosts for being propagated and how their hosts react for containing the infection
Q28601901Viroids: "living fossils" of primordial RNAs?