Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

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Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples is …
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scholarly articleQ13442814

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P356DOI10.1111/1755-0998.12063
P8608Fatcat IDrelease_fotekl4pzrejze2ef7ai7rjlz4
P932PMC publication ID3592992
P698PubMed publication ID23311589
P5875ResearchGate publication ID234120763

P50authorChristian SchlöttererQ87800445
P2093author name stringDavid Robelin
Robert Kofler
Andreas Futschik
Simon Boitard
Pierre Françoise
P2860cites workThe Sequence Alignment/Map format and SAMtoolsQ27860966
A tutorial on hidden Markov models and selected applications in speech recognitionQ29396607
Genomic scans for selective sweeps using SNP dataQ31013520
Association studies for next-generation sequencingQ35085282
On the utility of linkage disequilibrium as a statistic for identifying targets of positive selection in nonequilibrium populationsQ35945747
Detecting selective sweeps from pooled next-generation sequencing samples.Q36179858
Narcisse: a mirror view of conserved synteniesQ36454128
Detecting a local signature of genetic hitchhiking along a recombining chromosome.Q41778534
The next generation of molecular markers from massively parallel sequencing of pooled DNA samplesQ42027931
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasetsQ42657004
Detecting selective sweeps: a new approach based on hidden markov models.Q43121908
P4510describes a project that usesPythonQ28865
P433issue2
P921main subjectPythonQ28865
P6104maintained by WikiProjectWikiProject SoftwareQ15659621
P304page(s)337-340
P577publication date2013-01-11
P1433published inMolecular Ecology ResourcesQ15760135
P1476titlePool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples
P478volume13

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cites work (P2860)
Q92838931A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes
Q38844491Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach
Q90013539Analysis of genome-wide SNPs based on 2b-RAD sequencing of pooled samples reveals signature of selection in different populations of Haemonchus contortus
Q39472193Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution.
Q52807266Evolutionary genomics of Culex pipiens: global and local adaptations associated with climate, life-history traits and anthropogenic factors.
Q46258475FuzzyID2: A software package for large data set species identification via barcoding and metabarcoding using hidden Markov models and fuzzy set methods
Q34680352Genome-wide analysis of long-term evolutionary domestication in Drosophila melanogaster
Q92282144Genomic divergence and adaptive convergence in Drosophila simulans from Evolution Canyon, Israel
Q59134746Growth factor gene IGF1 is associated with bill size in the black-bellied seedcracker Pyrenestes ostrinus
Q36249836Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster
Q42736955Pooled Enrichment Sequencing Identifies Diversity and Evolutionary Pressures at NLR Resistance Genes within a Wild Tomato Population
Q46985853Population genomics from pool sequencing
Q30812783Population-genetic inference from pooled-sequencing data
Q93014310Population-level inferences from environmental DNA-Current status and future perspectives
Q28536910Private selective sweeps identified from next-generation pool-sequencing reveal convergent pathways under selection in two inbred Schistosoma mansoni strains
Q35958537Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system
Q45073178Regulation of gene expression and RNA editing in Drosophila adapting to divergent microclimates.
Q22121997Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
Q60043885Small and genetically highly structured populations in a long-legged bee, Rediviva longimanus, as inferred by pooled RAD-seq
Q41982872Stacks: an analysis tool set for population genomics
Q30000299Suitability of Different Mapping Algorithms for Genome-wide Polymorphism Scans with Pool-Seq Data
Q89684494The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Q92461275The spread of resistance to imidacloprid is restricted by thermotolerance in natural populations of Drosophila melanogaster
Q35804682Validation of Pooled Whole-Genome Re-Sequencing in Arabidopsis lyrata
Q37079560Whole-Genome Sequencing Reveals Genetic Variation in the Asian House Rat.

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