A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA)

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A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA) is …
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scholarly articleQ13442814

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P356DOI10.1261/RNA.2332406
P932PMC publication ID1440900
P698PubMed publication ID16540696
P5875ResearchGate publication ID7237404

P50authorMatthias HentzeQ99354
Vladimir BenesQ41125179
Martina MuckenthalerQ64821291
Andreas E KulozikQ89170845
Mirco CastoldiQ114515100
P2093author name stringSabine Schmidt
Mikkel Noerholm
P2860cites workMicroarray analysis of microRNA expression in the developing mammalian brainQ21092878
Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiationQ21194851
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genesQ24537363
Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cellsQ24555724
MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissuesQ24559264
OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profilingQ24575548
The microRNA RegistryQ24600787
Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancersQ24625794
Real-time expression profiling of microRNA precursors in human cancer cell linesQ24817136
NMR structure of an -L-LNA:RNA hybrid: structural implications for RNase H recognitionQ27642301
MicroRNA gene expression deregulation in human breast cancerQ27860690
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targetsQ27860792
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14Q27860849
Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNAQ27861124
MicroRNA expression profiles classify human cancersQ28032481
Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila developmentQ28259235
The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegansQ28270307
Facile means for quantifying microRNA expression by real-time PCRQ28277903
Specificity of microRNA target selection in translational repressionQ28776123
A microRNA array reveals extensive regulation of microRNAs during brain developmentQ29618667
Identification of microRNAs of the herpesvirus familyQ29618671
An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissuesQ29619171
Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA.Q31967436
Probing microRNAs with microarrays: tissue specificity and functional inferenceQ34366144
Dramatically improved RNA in situ hybridization signals using LNA-modified probesQ34366682
Mechanisms of translational control by the 3' UTR in development and differentiationQ36013975
MicroRNAs as regulators of mammalian hematopoiesisQ36057592
MicroRNAs in vertebrate developmentQ36175229
RAKE and LNA-ISH reveal microRNA expression and localization in archival human brainQ38439681
Microarray-based, high-throughput gene expression profiling of microRNAsQ38443466
A custom microarray platform for analysis of microRNA gene expressionQ40443862
Genomic analysis of a spontaneous model of breast cancer metastasis to bone reveals a role for the extracellular matrix.Q40465512
A high-throughput method to monitor the expression of microRNA precursorsQ40585425
Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probesQ40938404
MicroRNA and lung cancer.Q52047583
Profiling microRNA expression using sensitive cDNA probes and filter arraysQ80940283
P4510describes a project that usesImageJQ1659584
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectmicroRNA expressionQ60681249
P304page(s)913-920
P577publication date2006-03-15
P1433published inRNAQ7277164
P1476titleA sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA)
P478volume12

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cites work (P2860)
Q36491071A GATA-1-regulated microRNA locus essential for erythropoiesis
Q90395806A Lamping U-Shaped Fiber Biosensor Detector for MicroRNA
Q34080101A dumbbell probe-mediated rolling circle amplification strategy for highly sensitive microRNA detection
Q33468633A novel and universal method for microRNA RT-qPCR data normalization
Q24682753A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs
Q36003392A simple array platform for microRNA analysis and its application in mouse tissues.
Q37401645A specific miRNA signature promotes radioresistance of human cervical cancer cells
Q37426569Absolute quantification of microRNAs by using a universal reference
Q36843220Accurate molecular characterization of formalin-fixed, paraffin-embedded tissues by microRNA expression profiling
Q37262741Advances in microRNA experimental approaches to study physiological regulation of gene products implicated in CNS disorders
Q37184148Altered gene expression and miRNA expression associated with cancerous IEC-6 cell transformed by MNNG.
Q34635648Alternative processing of the U2 small nuclear RNA produces a 19-22nt fragment with relevance for the detection of non-small cell lung cancer in human serum
Q36944254An array-based analysis of microRNA expression comparing matched frozen and formalin-fixed paraffin-embedded human tissue samples
Q36563207Analysis of miR-205 and miR-155 expression in the blood of breast cancer patients
Q34178532Analysis of microRNA expression profiling identifies microRNA-503 regulates metastatic function in hepatocellular cancer cell
Q36540632Approaches to manipulating microRNAs in neurogenesis
Q36194745Artificial DNA and surface plasmon resonance
Q37262531Attomole microarray detection of microRNAs by nanoparticle-amplified SPR imaging measurements of surface polyadenylation reactions
Q36684084Baicalin modulates microRNA expression in UVB irradiated mouse skin
Q40222401Bead array-based microrna expression profiling of peripheral blood and the impact of different RNA isolation approaches
Q38818046Bim gene dosage is critical in modulating nephron progenitor survival in the absence of microRNAs during kidney development
Q92817642Biosensors for early diagnosis of pancreatic cancer: a review
Q33867325Circulating microRNAs: novel biomarkers for esophageal cancer
Q35735278Clinical implications of miRNAs in the pathogenesis, diagnosis and therapy of pancreatic cancer.
Q38184908Clinical relevance of circulating cell-free microRNAs in cancer
Q47572854Cloning and detecting signature microRNAs from mammalian cells
Q36996963Concise review: MicroRNA expression in multipotent mesenchymal stromal cells.
Q24650872Consensus miRNA expression profiles derived from interplatform normalization of microarray data
Q45840250Detection of small RNA molecules by a combination of branched rolling circle amplification and bioluminescent pyrophosphate assay
Q34096286Differential expression of microRNAs in dorsal root ganglia after sciatic nerve injury
Q41500041Direct and sensitive miRNA profiling from low-input total RNA.
Q36509269Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG).
Q33650801Downregulation of miR-218 contributes to epithelial-mesenchymal transition and tumor metastasis in lung cancer by targeting Slug/ZEB2 signaling
Q35995164Effect of UVB irradiation on microRNA expression in mouse epidermis
Q38665333Emerging Biosensing Approaches for microRNA Analysis
Q36885903Epigenetic therapy in lung cancer
Q33316825Exploration of small RNAs
Q35876067Expression profiling of microRNA using oligo DNA arrays
Q37683009Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available
Q38340344Fabrication of a Structure‐Specific RNA Binder for Array Detection of Label‐Free MicroRNA
Q24609213Feud or Friend? The Role of the miR-17-92 Cluster in Tumorigenesis
Q37114964Focus on RNA isolation: obtaining RNA for microRNA (miRNA) expression profiling analyses of neural tissue
Q35740397Functional Studies of microRNAs in Neural Stem Cells: Problems and Perspectives
Q39455181Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses
Q40225748Global microRNA expression profiles in insulin target tissues in a spontaneous rat model of type 2 diabetes.
Q50578568Hepatic stellate cell-specific gene silencing induced by an artificial microRNA for antifibrosis in vitro.
Q38637558High-throughput profiling for discovery of non-coding RNA biomarkers of lung disease
Q39926900High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA.
Q36824057Highly sensitive and specific microRNA expression profiling using BeadArray technology
Q54540459Highly sensitive detection of microRNA by chemiluminescence based on enzymatic polymerization.
Q34573002Host-virus interaction: a new role for microRNAs
Q46595269How to choose a normalization strategy for miRNA quantitative real-time (qPCR) arrays
Q34170239Hypoxia-induced down-regulation of microRNA-34a promotes EMT by targeting the Notch signaling pathway in tubular epithelial cells
Q41141524Identification of cytokine-induced modulation of microRNA expression and secretion as measured by a novel microRNA specific qPCR assay.
Q34718012Identification of differentially expressed microRNAs during the development of Chinese murine mammary gland
Q34655450Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts
Q40077320Identifying expression of new small RNAs by microarrays
Q54372283Impact of microRNA in normal and pathological respiratory epithelia.
Q43161221Impact of normalization on miRNA microarray expression profiling
Q41914524Inflammation-Mediated Regulation of MicroRNA Expression in Transplanted Pancreatic Islets.
Q41996281Isolation of microarray-grade total RNA, microRNA, and DNA from a single PAXgene blood RNA tube
Q59004652Locked Nucleic Acid Oligonucleotides toward Clinical Applications
Q38274712Locked nucleic acid based beacons for surface interaction studies and biosensor development
Q38315404Locked nucleic acid: tighter is different.
Q42553888Lung cancer xenografting alters microRNA profile but not immunophenotype
Q28283742MiR-21 overexpression in human primary squamous cell lung carcinoma is associated with poor patient prognosis
Q34808577MiRNAs as Biomarkers for Management of Patients With Colorectal Cancer
Q39953406Micro-RNA profiling reveals a role for miR-29 in human and murine liver fibrosis
Q49212856MicroRNA Based Liquid Biopsy: The Experience of the Plasma miRNA Signature Classifier (MSC) for Lung Cancer Screening
Q38178272MicroRNA Deregulations in Head and Neck Squamous Cell Carcinomas
Q33688185MicroRNA Detection in Bone Marrow Cells by LNA-FISH
Q55432318MicroRNA Signature of Traumatic Brain Injury: From the Biomarker Discovery to the Point-of-Care.
Q38782961MicroRNA alteration and putative target genes in high-grade prostatic intraepithelial neoplasia and prostate cancer: STAT3 and ZEB1 are upregulated during prostate carcinogenesis.
Q44890469MicroRNA detection by northern blotting using locked nucleic acid probes
Q34580547MicroRNA expression dynamics during murine and human erythroid differentiation
Q36470289MicroRNA expression in the adult mouse central nervous system
Q34982565MicroRNA expression profiles and miR-10a target in anti-benzo[a] pyrene-7, 8-diol-9, 10-epoxide-transformed human 16HBE cells.
Q34430694MicroRNA expression profiles of whole blood in lung adenocarcinoma
Q41956450MicroRNA expression profiling outperforms mRNA expression profiling in formalin-fixed paraffin-embedded tissues.
Q37473350MicroRNA function and dysregulation in bone tumors: the evidence to date
Q37617954MicroRNA implications across neurodevelopment and neuropathology
Q34835189MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis
Q37208449MicroRNA profiling and head and neck cancer
Q26861675MicroRNA profiling: approaches and considerations
Q34173950MicroRNA-138 regulates osteogenic differentiation of human stromal (mesenchymal) stem cells in vivo
Q36086177MicroRNA-148b enhances the radiosensitivity of non-Hodgkin's Lymphoma cells by promoting radiation-induced apoptosis
Q28511032MicroRNA-21 contributes to myocardial disease by stimulating MAP kinase signalling in fibroblasts
Q33426268MicroRNA-21 is up-regulated in allergic airway inflammation and regulates IL-12p35 expression
Q24644382MicroRNA-513 regulates B7-H1 translation and is involved in IFN-gamma-induced B7-H1 expression in cholangiocytes
Q36294667MicroRNA: implications for cancer
Q45391051MicroRNAome of splenic macrophages in hypersplenism due to portal hypertension in hepatitis B virus-related cirrhosis
Q34078121MicroRNAs and lung cancer: Biology and applications in diagnosis and prognosis.
Q37971335MicroRNAs and their roles in osteoclast differentiation
Q37267684MicroRNAs as Novel Biomarkers for Breast Cancer
Q55255622MicroRNAs in Smoking-Related Carcinogenesis: Biomarkers, Functions, and Therapy.
Q38163421MicroRNAs in islet immunobiology and transplantation
Q36921135MicroRNAs in tumorigenesis: a primer
Q80845703Microarray analysis of miRNA gene expression
Q33395144Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease
Q33416811Microfludic device for creating ionic strength gradients over DNA microarrays for efficient DNA melting studies and assay development
Q30486511Molecular assays for the detection of microRNAs in prostate cancer
Q37243359Molecular medicine of microRNAs: structure, function and implications for diabetes.
Q36692835Molecular therapy in the microRNA era.
Q43243460Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface
Q36997841Multiplexed detection methods for profiling microRNA expression in biological samples
Q33925763Myc-induced microRNAs integrate Myc-mediated cell proliferation and cell fate
Q30972954NF-kappaB p65-dependent transactivation of miRNA genes following Cryptosporidium parvum infection stimulates epithelial cell immune responses
Q38099208Non-coding RNAs in the development of sensory organs and related diseases.
Q40492444Northern Blotting Techniques for Small RNAs
Q42544987Northern blot detection of endogenous small RNAs (approximately14 nt) in bacterial total RNA extracts
Q36909339Novel and future applications of microarrays in toxicological research
Q36589155Opportunities and challenges for selected emerging technologies in cancer epidemiology: mitochondrial, epigenomic, metabolomic, and telomerase profiling
Q37238873Optimization of encoded hydrogel particles for nucleic acid quantification
Q27497347Optimized high-throughput microRNA expression profiling provides novel biomarker assessment of clinical prostate and breast cancer biopsies
Q48693128Over-expression of miR-196b-5p is significantly associated with the progression of myelodysplastic syndrome
Q50021343Peptide Nucleic Acid-Based Biosensors for Cancer Diagnosis.
Q43117756Peptide nucleic acid-based array for detecting and genotyping human papillomaviruses
Q34412367Plasma miR-601 and miR-760 are novel biomarkers for the early detection of colorectal cancer
Q30484251Podocyte-specific loss of functional microRNAs leads to rapid glomerular and tubular injury
Q38718486Profiling cell-free and circulating miRNA: a clinical diagnostic tool for different cancers.
Q51767113Profiling highly conserved microrna expression in recombinant IgG-producing and parental Chinese hamster ovary cells.
Q33480668Profiling microRNA expression in Arabidopsis pollen using microRNA array and real-time PCR
Q33520071RNA degradation compromises the reliability of microRNA expression profiling
Q38449526Recent advances of microRNA-based molecular diagnostics to reduce false-positive lung cancer imaging
Q33336408Replicative senescence of mesenchymal stem cells: a continuous and organized process
Q24648286Repression of the miR-17-92 cluster by p53 has an important function in hypoxia-induced apoptosis
Q31103041Retracted: MiR-145 Regulates Epithelial to Mesenchymal Transition of Breast Cancer Cells by Targeting Oct4
Q37327641Robust RNAi enhancement via human Argonaute-2 overexpression from plasmids, viral vectors and cell lines
Q39032588Robust global microRNA expression profiling using next-generation sequencing technologies
Q36950439Role of miRNA in carcinogenesis and biomarker selection: a methodological view
Q57164564SERS-based direct and sandwich assay methods for mir-21 detection
Q34226854Scanometric microRNA array profiling of prostate cancer markers using spherical nucleic acid-gold nanoparticle conjugates
Q51524575Simplified microchip electrophoresis for rapid separation of urine proteins.
Q34576000Single cell microRNA analysis using microfluidic flow cytometry
Q34249894Sizing up the future of microRNA analysis.
Q39886691Specificity and functionality of microRNA inhibitors
Q30403076Surface Enzyme Chemistries for Ultrasensitive Microarray Biosensing with SPR Imaging
Q38430803Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples
Q33648421Tailoring DNA structure to increase target hybridization kinetics on surfaces
Q86809678Technical Aspects Related to the Analysis of Circulating microRNAs
Q38294147Technology in MicroRNA Profiling: Circulating MicroRNAs as Noninvasive Cancer Biomarkers in Breast Cancer
Q46160609Testis-derived microRNA profiles of African clawed frogs (Xenopus) and their sterile hybrids
Q24628683The liver-specific microRNA miR-122 controls systemic iron homeostasis in mice
Q35012398The pro-apoptotic protein Bim is a microRNA target in kidney progenitors
Q38100732The role of microRNAs in adipocyte differentiation
Q37420066Tissue array for Tp53, C-myc, CCND1 gene over-expression in different tumors
Q38296132Toward biosensors for the detection of circulating microRNA as a cancer biomarker: an overview of the challenges and successes.
Q33859313Universal Biotin-PEG-Linked Gold Nanoparticle Probes for the Simultaneous Detection of Nucleic Acids and Proteins
Q33889404Upregulation of MiR-155 in nasopharyngeal carcinoma is partly driven by LMP1 and LMP2A and downregulates a negative prognostic marker JMJD1A.
Q33308948Use of a multi-thermal washer for DNA microarrays simplifies probe design and gives robust genotyping assays
Q41118667Whole blood microRNA expression may not be useful for screening non-small cell lung cancer.
Q57397530miChip: A microarray platform for expression profiling of microRNAs based on locked nucleic acid (LNA) oligonucleotide capture probes
Q57397529miChip: an array-based method for microRNA expression profiling using locked nucleic acid capture probes
Q33748429miR-139-5p modulates cortical neuronal migration by targeting Lis1 in a rat model of focal cortical dysplasia
Q28278471miR-15b and miR-16 modulate multidrug resistance by targeting BCL2 in human gastric cancer cells
Q24606274miR-17, miR-19b, miR-20a, and miR-106a are down-regulated in human aging
Q39436512miR-1915 inhibits Bcl-2 to modulate multidrug resistance by increasing drug-sensitivity in human colorectal carcinoma cells
Q39335411miR-297 modulates multidrug resistance in human colorectal carcinoma by down-regulating MRP-2.
Q37519422miR-429 identified by dynamic transcriptome analysis is a new candidate biomarker for colorectal cancer prognosis
Q33591648miR-503-5p confers drug resistance by targeting PUMA in colorectal carcinoma
Q38282466miRNA detection methods and clinical implications in lung cancer.
Q36922253miRNA genetic alterations in human cancers
Q26852074miRNA profiling for biomarker discovery in multiple sclerosis: from microarray to deep sequencing
Q36967297miRNAs and their potential for use against cancer and other diseases
Q36780910microRNA: an emerging therapeutic
Q38472671microRNAs in CNS disorders
Q37035388microRNAs: a new emerging class of players for disease diagnostics and gene therapy

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