| scholarly article | Q13442814 |
| P2093 | author name string | Ziheng Yang | |
| Ralph Burgess | |||
| P2860 | cites work | Initial sequencing and analysis of the human genome | Q21045365 |
| Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model | Q21145237 | ||
| Mapping Human Genetic Ancestry | Q22066010 | ||
| Complex speciation of humans and chimpanzees | Q22122218 | ||
| A new hominid from the Upper Miocene of Chad, Central Africa | Q22122509 | ||
| Genetic evidence for complex speciation of humans and chimpanzees | Q22122510 | ||
| Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees | Q24535718 | ||
| Nucleotide diversity in gorillas | Q24545668 | ||
| MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
| A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences | Q27860580 | ||
| Dating of the human-ape splitting by a molecular clock of mitochondrial DNA | Q27860908 | ||
| Great ape DNA sequences reveal a reduced diversity and an expansion in humans | Q28200048 | ||
| A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms | Q28203288 | ||
| The hitch-hiking effect of a favourable gene | Q28241578 | ||
| Accounting for bias from sequencing error in population genetic estimates | Q28256156 | ||
| Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis | Q28282820 | ||
| Divergence time and population size in the lineage leading to modern humans | Q28284222 | ||
| Heterogeneous genomic molecular clocks in primates | Q28767365 | ||
| Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements | Q28776423 | ||
| Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis | Q28776573 | ||
| Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods | Q29547744 | ||
| Hybrid speciation | Q29615012 | ||
| Alu repeats and human genomic diversity | Q29618341 | ||
| Primate molecular divergence dates | Q29618771 | ||
| Polyphyly and gene flow between non-sibling Heliconius species | Q33240657 | ||
| A combined linkage-physical map of the human genome | Q33910584 | ||
| The evolutionary dynamics of human endogenous retroviral families | Q34530194 | ||
| Demographic history and genetic differentiation in apes | Q34534579 | ||
| A pseudohitchhiking model of X vs. autosomal diversity | Q34569423 | ||
| Male-driven molecular evolution: a model and nucleotide sequence analysis | Q34688649 | ||
| The comparative demography of primates: with some comments on the evolution of life histories | Q34892450 | ||
| Contrasting patterns of introgression at X-linked loci across the hybrid zone between subspecies of the European rabbit (Oryctolagus cuniculus). | Q34895521 | ||
| Identification of a new, abundant superfamily of mammalian LTR-transposons | Q34980402 | ||
| Recent human effective population size estimated from linkage disequilibrium | Q35698958 | ||
| Reduced X-linked nucleotide polymorphism in Drosophila simulans | Q35755769 | ||
| Evolutionary biology: how did the human species form? | Q36571827 | ||
| Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. | Q43192302 | ||
| Transitions, transversions, and the molecular evolutionary clock | Q44951717 | ||
| The UCSC Known Genes | Q46070887 | ||
| Fine-scale recombination patterns differ between chimpanzees and humans | Q47291027 | ||
| Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1. | Q47643970 | ||
| X-chromosome inactivation: a repeat hypothesis | Q47790328 | ||
| Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison. | Q51323042 | ||
| Characteristics, causes and evolutionary consequences of male-biased mutation. | Q51775095 | ||
| Mammalian male mutation bias: impacts of generation time and regional variation in substitution rates. | Q51787575 | ||
| The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population. | Q51817997 | ||
| Gene flow between Drosophila pseudoobscura and D. persimilis. | Q52586134 | ||
| The rate of spontaneous mutation of a human gene | Q56094417 | ||
| The Relative Rates of Evolution of Sex Chromosomes and Autosomes | Q56385768 | ||
| P433 | issue | 9 | |
| P304 | page(s) | 1979-1994 | |
| P577 | publication date | 2008-07-04 | |
| P1433 | published in | Molecular Biology and Evolution | Q1992656 |
| P1476 | title | Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors | |
| P478 | volume | 25 |
| Q91875467 | A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis |
| Q28742402 | A comparative approach shows differences in patterns of numt insertion during hominoid evolution |
| Q34005332 | A comprehensive map of mobile element insertion polymorphisms in humans |
| Q28727425 | A direct characterization of human mutation based on microsatellites |
| Q33630956 | A likelihood ratio test of speciation with gene flow using genomic sequence data |
| Q28710250 | A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species |
| Q45004431 | A scalable and flexible approach for investigating the genomic landscapes of phylogenetic incongruence |
| Q33492584 | Accurate and fast methods to estimate the population mutation rate from error prone sequences |
| Q22242853 | An autosomal analysis gives no genetic evidence for complex speciation of humans and chimpanzees |
| Q22065898 | Analysis of genetic inheritance in a family quartet by whole-genome sequencing |
| Q37351807 | Ancestral population genomics: the coalescent hidden Markov model approach |
| Q28740891 | Bayesian inference of ancient human demography from individual genome sequences |
| Q35219942 | Bayesian species delimitation can be robust to guide-tree inference errors |
| Q28751374 | Bayesian species delimitation using multilocus sequence data |
| Q28589525 | Catalysis and Structure of Zebrafish Urate Oxidase Provide Insights into the Origin of Hyperuricemia in Hominoids |
| Q39032310 | Challenges in Species Tree Estimation Under the Multispecies Coalescent Model |
| Q41276937 | Chimpanzee genomic diversity reveals ancient admixture with bonobos |
| Q58791840 | Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex |
| Q82607095 | Coalescent analysis of mtDNA indicates Pleistocene divergence among three species of howler monkey (Alouatta spp.) and population subdivision within the Atlantic Coastal Forest species, A. guariba |
| Q46271653 | Coalescent-based analyses of genomic sequence data provide a robust resolution of phylogenetic relationships among major groups of gibbons |
| Q50026489 | Comparison of Methods for Molecular Species Delimitation across a Range of Speciation Scenarios |
| Q33914212 | Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes |
| Q34000898 | Contrasting X-linked and autosomal diversity across 14 human populations |
| Q35081395 | Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences |
| Q101632384 | Cytonuclear equilibrium following interspecific introgression in a turtle lacking sex chromosomes |
| Q35545044 | Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC. |
| Q35887398 | Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae). |
| Q30658239 | Discrepant partitioning of genetic diversity in mouse lemurs and dwarf lemurs--biological reality or taxonomic bias? |
| Q39404218 | Distribution of coalescent histories under the coalescent model with gene flow |
| Q34109025 | Divergence, demography and gene loss along the human lineage. |
| Q28601094 | Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times? |
| Q37346376 | Doubts about complex speciation between humans and chimpanzees |
| Q33688822 | Estimating divergence parameters with small samples from a large number of loci |
| Q33847775 | Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model |
| Q42624915 | Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change |
| Q39802763 | Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves |
| Q43759186 | Estimation of the ancestral effective population sizes of African great apes under different selection regimes |
| Q42016107 | Evaluation of a bayesian coalescent method of species delimitation |
| Q33527005 | Evidence for pervasive adaptive protein evolution in wild mice |
| Q40902599 | Evolutionary history of Purple cone spruce (Picea purpurea) in the Qinghai-Tibet Plateau: homoploid hybrid origin and Pleistocene expansion. |
| Q40790265 | Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant Species Arabidopsis thaliana (L.) Heynh |
| Q37194806 | Factors influencing ascertainment bias of microsatellite allele sizes: impact on estimates of mutation rates |
| Q33708594 | Female-to-male breeding ratio in modern humans-an analysis based on historical recombinations |
| Q30912168 | Fine-scale phylogenetic discordance across the house mouse genome |
| Q28727289 | Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution |
| Q28741369 | Genetic diversity in India and the inference of Eurasian population expansion |
| Q21090176 | Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants |
| Q37271218 | Great ape genomics |
| Q36744616 | How reticulated are species? |
| Q36511175 | Hypertension increases with aging and obesity in chimpanzees (Pan troglodytes). |
| Q48155335 | Impact of long-term chromosomal shuffling on the multispecies coalescent analysis of two anthropoid primate lineages. |
| Q30600649 | Improved reversible jump algorithms for Bayesian species delimitation |
| Q39583339 | In silico phylogenomics using complete genomes: a case study on the evolution of hominoids |
| Q28742411 | Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection |
| Q57760233 | Inferring the Process of Human-Chimpanzee Speciation |
| Q22122159 | Insights into hominid evolution from the gorilla genome sequence |
| Q52806484 | Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans. |
| Q89545432 | Maximum Likelihood Estimation of Species Trees from Gene Trees in the Presence of Ancestral Population Structure |
| Q39530578 | Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three Species |
| Q47904004 | Maximum likelihood implementation of an isolation-with-migration model with three species for testing speciation with gene flow |
| Q24630088 | Mobile elements reveal small population size in the ancient ancestors of Homo sapiens |
| Q88917224 | Modeling Hybridization Under the Network Multispecies Coalescent |
| Q46782879 | Molecular phylogenetics and phylogeographic structure of Sorex bedfordiae based on mitochondrial and nuclear DNA sequences. |
| Q37997899 | Molecular phylogenetics: principles and practice |
| Q36190809 | Multilocus approaches reveal underestimated species diversity and inter-specific gene flow in pikas (Ochotona) from southwestern China. |
| Q51232514 | Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus. |
| Q21192761 | Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation |
| Q101450345 | Multilocus phylogeny of African striped grass mice (Lemniscomys): stripe pattern only partly reflects evolutionary relationships |
| Q35211692 | Mutation rate distribution inferred from coincident SNPs and coincident substitutions |
| Q34055381 | Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome. |
| Q35119741 | Neutral nuclear variation in Baboons (genus Papio) provides insights into their evolutionary and demographic histories |
| Q37810545 | Nonadaptive processes in primate and human evolution |
| Q38655916 | On the independent gene trees assumption in phylogenomic studies. |
| Q28750213 | Phylogenomics of primates and their ancestral populations |
| Q28082728 | Population genetic studies in the genomic sequencing era |
| Q38041862 | Primate molecular phylogenetics in a genomic era. |
| Q24633781 | Rates and fitness consequences of new mutations in humans |
| Q28681558 | Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes |
| Q28660984 | Robust estimates of divergence times and selection with a poisson random field model: a case study of comparative phylogeographic data |
| Q43615911 | Robustness to divergence time underestimation when inferring species trees from estimated gene trees |
| Q37561100 | Sequencing primate genomes: what have we learned? |
| Q84524681 | Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats |
| Q90570486 | Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent |
| Q33812545 | The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important |
| Q46202339 | The accuracy of species tree estimation under simulation: a comparison of methods |
| Q46434784 | The effective population sizes of the anthropoid ancestors of the human-chimpanzee lineage provide insights on the historical biogeography of the great apes |
| Q28658267 | The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci |
| Q46528972 | The precision of the hominid timescale estimated by relaxed clock methods |
| Q64123899 | The spectre of too many species |
| Q38231900 | Unraveling recombination rate evolution using ancestral recombination maps |
| Q50000691 | Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case |
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