| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2013PLoSO...856645V |
| P356 | DOI | 10.1371/JOURNAL.PONE.0056645 |
| P953 | full work available online at | http://dx.plos.org/10.1371/journal.pone.0056645 |
| https://europepmc.org/articles/PMC3578925 | ||
| https://europepmc.org/articles/PMC3578925?pdf=render | ||
| https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0056645&type=printable | ||
| P932 | PMC publication ID | 3578925 |
| P698 | PubMed publication ID | 23437194 |
| P5875 | ResearchGate publication ID | 235718470 |
| P50 | author | Thom Vreven | Q64495234 |
| P2093 | author name string | Zhiping Weng | |
| Howook Hwang | |||
| P2860 | cites work | ZRANK: reranking protein docking predictions with an optimized energy function | Q51042892 |
| Integrating statistical pair potentials into protein complex prediction | Q51626110 | ||
| ZDOCK: an initial-stage protein-docking algorithm | Q52015255 | ||
| Docking unbound proteins using shape complementarity, desolvation, and electrostatics | Q52042875 | ||
| Protein docking using continuum electrostatics and geometric fit | Q73739194 | ||
| Sampling Rotation Groups by Successive Orthogonal Images | Q125585873 | ||
| Recent Progress and Future Directions in Protein-Protein Docking | Q22241335 | ||
| Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques | Q24562739 | ||
| SCOP: a structural classification of proteins database for the investigation of sequences and structures | Q27860689 | ||
| Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations | Q28188949 | ||
| Modelling protein docking using shape complementarity, electrostatics and biochemical information | Q28249132 | ||
| Protein docking by the underestimation of free energy funnels in the space of encounter complexes | Q28473662 | ||
| Prediction of protein-protein interactions by docking methods. | Q30329611 | ||
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology | Q30408207 | ||
| Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration | Q33957936 | ||
| Accelerating protein docking in ZDOCK using an advanced 3D convolution library | Q34031429 | ||
| $F^2$Dock: Fast Fourier Protein-Protein Docking | Q34680392 | ||
| A systematic study of low-resolution recognition in protein--protein complexes | Q35551589 | ||
| Principles of flexible protein-protein docking | Q36952164 | ||
| Accounting for conformational changes during protein-protein docking | Q37701052 | ||
| Integrating atom‐based and residue‐based scoring functions for protein–protein docking | Q38666495 | ||
| A combination of rescoring and refinement significantly improves protein docking performance | Q41468197 | ||
| Performance of ZDOCK and ZRANK in CAPRI rounds 13-19. | Q41981451 | ||
| Protein–protein docking benchmark version 4.0 | Q42093255 | ||
| A machine learning approach for the prediction of protein surface loop flexibility | Q42143961 | ||
| PIE-efficient filters and coarse grained potentials for unbound protein-protein docking | Q42149736 | ||
| Prediction of protein–protein binding free energies | Q42201880 | ||
| FunHunt: model selection based on energy landscape characteristics. | Q45964246 | ||
| Funnel hunting in a rough terrain: learning and discriminating native energy funnels. | Q45964722 | ||
| Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking | Q47631078 | ||
| ClusPro: an automated docking and discrimination method for the prediction of protein complexes | Q48565772 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | algorithm | Q8366 |
| computational biology | Q177005 | ||
| Molecular Docking | Q403004 | ||
| P304 | page(s) | e56645 | |
| P577 | publication date | 2013-02-21 | |
| P1433 | published in | PLOS One | Q564954 |
| P1476 | title | Exploring angular distance in protein-protein docking algorithms | |
| Exploring Angular Distance in Protein-Protein Docking Algorithms | |||
| P478 | volume | 8 |
| Q41981433 | Binding interface prediction by combining protein-protein docking results |
| Q30432648 | Evaluating template-based and template-free protein-protein complex structure prediction |
| Q52318903 | Integrating cross-linking experiments with ab initio protein-protein docking |
| Q50562538 | Performance of ZDOCK and IRAD in CAPRI rounds 28-34. |
| Q37684662 | Performance of ZDOCK in CAPRI rounds 20-26. |
| Q45949461 | Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility. |
| Q51103036 | Rapid determination of RMSDs corresponding to macromolecular rigid body motions |
| Q36614033 | cNMA: a framework of encounter complex-based normal mode analysis to model conformational changes in protein interactions |
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