Kinetics of error generation in homologous B-family DNA polymerases.

scientific article

Kinetics of error generation in homologous B-family DNA polymerases. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKL300
P932PMC publication ID1459414
P698PubMed publication ID16687658
P5875ResearchGate publication ID7093013

P50authorSusan S WallaceQ41886664
Linda Reha-KrantzQ74105301
P2093author name stringWendy Cooper
Matthew Hogg
P2860cites workLesion (in)tolerance reveals insights into DNA replication fidelityQ22121984
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Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poletaQ33988449
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Bacteriophage T4 DNA polymerase mutations that confer sensitivity to the PPi analog phosphonoacetic acidQ36638832
Crystallographic snapshots of a replicative DNA polymerase encountering an abasic siteQ37543875
Base substitution mutations induced by metabolically activated aflatoxin B1.Q37610673
Refined model for primer/template binding by HIV-1 reverse transcriptase: pre-steady-state kinetic analyses of primer/template binding and nucleotide incorporation events distinguish between different binding modes depending on the nature of the nucQ38320371
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In vitro selection of sequence contexts which enhance bypass of abasic sites and tetrahydrofuran by T4 DNA polymerase holoenzyme.Q42692838
Dynamics of translesion DNA synthesis catalyzed by the bacteriophage T4 exonuclease-deficient DNA polymeraseQ43636645
Using 2-aminopurine fluorescence to detect base unstacking in the template strand during nucleotide incorporation by the bacteriophage T4 DNA polymeraseQ43932848
Evaluating the contribution of base stacking during translesion DNA replicationQ44724450
The activity of selected RB69 DNA polymerase mutants can be restored by manganese ions: the existence of alternative metal ion ligands used during the polymerization cycleQ44905680
Studies on the biochemical basis of spontaneous mutation. I. A comparison of the deoxyribonucleic acid polymerases of mutator, antimutator, and wild type strains of bacteriophage T4.Q45061692
Correlation of the kinetics of finger domain mutants in RB69 DNA polymerase with its structureQ45711170
DNA polymerase insertion fidelity. Gel assay for site-specific kineticsQ46103467
Gel kinetic analysis of DNA polymerase fidelity in the presence of proofreading using bacteriophage T4 DNA polymeraseQ46607481
Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3'-exonuclease activity of bacteriophage T4 DNA polymeraseQ46836231
Inactivation of the 3'-5' exonuclease of the replicative T4 DNA polymerase allows translesion DNA synthesis at an abasic siteQ47905755
Comparative rates of spontaneous mutationQ50244165
Nucleotide insertion kinetics opposite abasic lesions in DNA.Q52463152
Translesional synthesis on DNA templates containing a single abasic site. A mechanistic study of the "A rule".Q54565641
Genetic and biochemical studies of bacteriophage T4 DNA polymerase 3'-->5'-exonuclease activity.Q54646521
Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases.Q54763221
Kinetic characterization of the polymerase and exonuclease activities of the gene 43 protein of bacteriophage T4Q67506968
On the fidelity of DNA replication. The accuracy of T4 DNA polymerases in copying phi X174 DNA in vitroQ72805085
Manganese substantially alters the dynamics of translesion DNA synthesisQ77898416
P433issue9
P407language of work or nameEnglishQ1860
P304page(s)2528-2535
P577publication date2006-05-10
P1433published inNucleic Acids ResearchQ135122
P1476titleKinetics of error generation in homologous B-family DNA polymerases
P478volume34

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cites work (P2860)
Q27680226A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site
Q41861523Accessory proteins assist exonuclease-deficient bacteriophage T4 DNA polymerase in replicating past an abasic site
Q33997867Engineering processive DNA polymerases with maximum benefit at minimum cost
Q30503355Identification of a new motif in family B DNA polymerases by mutational analyses of the bacteriophage t4 DNA polymerase.
Q34442824Kinetic approaches to understanding the mechanisms of fidelity of the herpes simplex virus type 1 DNA polymerase
Q27659910Kinetics of Mismatch Formation opposite Lesions by the Replicative DNA Polymerase from Bacteriophage RB69
Q64231032PCNA accelerates the nucleotide incorporation rate by DNA polymerase δ
Q37119500Reaction mechanism of the epsilon subunit of E. coli DNA polymerase III: insights into active site metal coordination and catalytically significant residues.
Q37294825Strand displacement synthesis by yeast DNA polymerase ε.
Q28273546Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B family
Q27675203Structure of the 2-Aminopurine-Cytosine Base Pair Formed in the Polymerase Active Site of the RB69 Y567A-DNA Polymerase
Q27675214The Miscoding Potential of 5-Hydroxycytosine Arises Due to Template Instability in the Replicative Polymerase Active Site
Q35156151Use of 2-aminopurine fluorescence to study the role of the beta hairpin in the proofreading pathway catalyzed by the phage T4 and RB69 DNA polymerases
Q41652726Yeast DNA polymerase ϵ catalytic core and holoenzyme have comparable catalytic rates

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