Ionic solvation studied by image-charge reaction field method.

scientific article

Ionic solvation studied by image-charge reaction field method. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1063/1.3530094
P932PMC publication ID3045217
P698PubMed publication ID21280685
P5875ResearchGate publication ID49797861

P50authorYuchun LinQ51909797
Andriy BaumketnerQ61827987
P2093author name stringWei Song
Donald Jacobs
Wei Cai
Shaozhong Deng
P2860cites workComparison of simple potential functions for simulating liquid waterQ26778447
Electrostatics calculations: latest methodological advancesQ28302264
A Non-Iterative Matrix Method for Constraint Molecular Dynamics SimulationsQ29011197
Die Berechnung optischer und elektrostatischer GitterpotentialeQ29012957
Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteinsQ30421728
Importance of explicit salt ions for protein stability in molecular dynamics simulation.Q30430766
Stability of the beta-sheet of the WW domain: A molecular dynamics simulation studyQ33178985
Recent advances in the development and application of implicit solvent models in biomolecule simulationsQ35749514
Improving implicit solvent simulations: a Poisson-centric viewQ36101076
Extending the Fast Multipole Method for Charges inside a Dielectric Sphere in an Ionic Solvent: High Order Image Approximations for Reaction FieldsQ36415642
Biomolecular modeling: Goals, problems, perspectivesQ36500277
Recent advances in implicit solvent-based methods for biomolecular simulationsQ36662616
Liquid-structure forces and electrostatic modulation of biomolecular interactions in solutionQ36772328
Refinement of the NMR solution structure of the gamma-carboxyglutamic acid domain of coagulation factor IX using molecular dynamics simulation with initial Ca2+ positions determined by a genetic algorithmQ36848125
Removing systematic errors in interionic potentials of mean force computed in molecular simulations using reaction-field-based electrostaticsQ37164032
An image-based reaction field method for electrostatic interactions in molecular dynamics simulations of aqueous solutionsQ37414326
Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics studyQ38324310
The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.Q43259843
Optimized Radii for Poisson-Boltzmann Calculations with the AMBER Force FieldQ46225929
On the Ewald artifacts in computer simulations. The test-case of the octaalanine peptide with charged terminiQ46629338
Nonperiodic boundary conditions for solvated systemsQ46645831
Cutoff size does strongly influence molecular dynamics results on solvated polypeptidesQ47410616
Computation of methodology-independent ionic solvation free energies from molecular simulations. II. The hydration free energy of the sodium cation.Q51630155
Computation of methodology-independent ionic solvation free energies from molecular simulations. I. The electrostatic potential in molecular liquids.Q51630813
GROMACS: A message-passing parallel molecular dynamics implementationQ51756282
Optimized atomic radii for protein continuum electrostatics solvation forces.Q51931449
Taming cut-off induced artifacts in molecular dynamics studies of solvated polypeptides. The reaction field method.Q52408315
CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsQ53340989
Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systemsQ56750591
Electrostatic free energy calculations using the generalized solvent boundary potential methodQ56770498
A fast algorithm for particle simulationsQ56864323
The dielectric self-consistent field method. I. Highways, byways, and illustrative resultsQ57831770
The dielectric self-consistent field method. II. Application to the study of finite range effectsQ57831773
Electrostatic Potentials and Free Energies of Solvation of Polar and Charged MoleculesQ57875442
Free Energy of Ionic HydrationQ57875536
Computer simulations do not support Cl-Cl pairing in aqueous NaCl solutionQ57875628
Ion pair potentials-of-mean-force in waterQ57875634
Impact of Cl- and Na+ ions on simulated structure and dynamics of betaARK1 PH domainQ58175544
Molecular dynamics studies of solvated polypeptides: Why the cut-off scheme does not workQ58616625
Consistent calculation of the static and frequency-dependent dielectric constant in computer simulationsQ58616690
Optimized Monte Carlo data analysisQ59732808
New Monte Carlo technique for studying phase transitionsQ59732852
Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approachQ78072769
Dielectric response of a polar fluid trapped in a spherical nanocavityQ83179379
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)044105
P577publication date2011-01-01
P1433published inJournal of Chemical PhysicsQ900472
P1476titleIonic solvation studied by image-charge reaction field method
P478volume134