| scholarly article | Q13442814 |
| review article | Q7318358 |
| P6179 | Dimensions Publication ID | 1043068639 |
| P356 | DOI | 10.1038/NRMICRO1640 |
| P698 | PubMed publication ID | 17435790 |
| P5875 | ResearchGate publication ID | 6392275 |
| P2093 | author name string | James M Berger | |
| Melissa L Mott | |||
| P2860 | cites work | Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding | Q24540300 |
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| Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control | Q27627450 | ||
| The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation | Q27639653 | ||
| Structural basis of replication origin recognition by the DnaA protein | Q27640922 | ||
| Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp | Q27642098 | ||
| Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA | Q27730804 | ||
| Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn | Q27734267 | ||
| Mutations in DnaA protein suppress the growth arrest of acidic phospholipid-deficient Escherichia coli cells | Q28354843 | ||
| Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA | Q28360242 | ||
| Cell cycle control by an essential bacterial two-component signal transduction protein | Q29346643 | ||
| Cell cycle regulator phosphorylation stimulates two distinct modes of binding at a chromosome replication origin | Q29346647 | ||
| A dual binding site for integration host factor and the response regulator CtrA inside the Caulobacter crescentus replication origin | Q29346650 | ||
| Evolutionary history and higher order classification of AAA+ ATPases | Q29615260 | ||
| AAA+ proteins: have engine, will work | Q29617410 | ||
| Evolutionary relationships and structural mechanisms of AAA+ proteins | Q29617454 | ||
| Crystal structure of a SeqA-N filament: implications for DNA replication and chromosome organization | Q30475947 | ||
| DnaC protein contains a modified ATP-binding motif and belongs to a novel family of ATPases including also DnaA. | Q30838822 | ||
| An expanded view of bacterial DNA replication. | Q31076593 | ||
| Binding of SeqA protein to DNA requires interaction between two or more complexes bound to separate hemimethylated GATC sequences | Q33890806 | ||
| Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli | Q34085669 | ||
| Relationship between Cell Size and Time of Initiation of DNA Replication | Q34220973 | ||
| The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. | Q34245423 | ||
| E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration | Q34294934 | ||
| DnaA initiator--also a transcription factor | Q34425115 | ||
| Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus subtilis | Q34478927 | ||
| Integration host factor: a protein for all reasons. | Q34563561 | ||
| The Escherichia coli Fis protein prevents initiation of DNA replication from oriC in vitro | Q34610091 | ||
| In vivo evidence for the involvement of anionic phospholipids in initiation of DNA replication in Escherichia coli | Q34731920 | ||
| Control of chromosome replication in caulobacter crescentus | Q34762795 | ||
| Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein | Q34977405 | ||
| Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complex | Q35069602 | ||
| Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein | Q35210160 | ||
| The Fis protein: it's not just for DNA inversion anymore | Q35658496 | ||
| Negative control of bacterial DNA replication by a cell cycle regulatory protein that binds at the chromosome origin | Q35669148 | ||
| The activities of eukaryotic replication origins in chromatin | Q35690860 | ||
| Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases. | Q35750529 | ||
| Flexibility and governance in eukaryotic DNA replication. | Q35958221 | ||
| Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP. | Q36852282 | ||
| Coordinating DNA replication initiation with cell growth: differential roles for DnaA and SeqA proteins | Q37230178 | ||
| DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding | Q37259735 | ||
| Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin. | Q37625514 | ||
| More than just "histone-like" proteins | Q37826709 | ||
| Interaction of the initiator protein DnaA of Escherichia coli with its DNA target | Q38293364 | ||
| ATP- and ADP-dnaA protein, a molecular switch in gene regulation. | Q38318935 | ||
| Site-directed mutational analysis for the membrane binding of DnaA protein. Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids | Q38332214 | ||
| The FIS protein fails to block the binding of DnaA protein to oriC, the Escherichia coli chromosomal origin | Q39725677 | ||
| Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer | Q39729694 | ||
| Where does bacterial replication start? Rules for predicting the oriC region | Q39752100 | ||
| A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation | Q40388140 | ||
| The regulation of transcription initiation by integration host factor. | Q40468930 | ||
| The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli | Q40505779 | ||
| Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling | Q41791841 | ||
| SeqA blocking of DnaA-oriC interactions ensures staged assembly of the E. coli pre-RC. | Q41836652 | ||
| The Bacillus subtilis DnaD and DnaB proteins exhibit different DNA remodelling activities. | Q41838777 | ||
| Architecture of bacterial replication initiation complexes: orisomes from four unrelated bacteria | Q41981022 | ||
| IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli | Q42619952 | ||
| A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome | Q42639634 | ||
| Molecular mechanism for functional interaction between DnaA protein and acidic phospholipids: identification of important amino acids | Q43511068 | ||
| Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome | Q44347022 | ||
| DnaA Protein of Escherichia coli: oligomerization at the E. coli chromosomal origin is required for initiation and involves specific N-terminal amino acids | Q44514207 | ||
| Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA. | Q44775863 | ||
| The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication origin | Q45061770 | ||
| Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex | Q45195721 | ||
| Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. | Q46030233 | ||
| The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase. | Q47802858 | ||
| High-affinity binding sites for the initiator protein DnaA on the chromosome of Escherichia coli | Q47986767 | ||
| SeqA: a negative modulator of replication initiation in E. coli | Q48082693 | ||
| Sites of dnaA protein-binding in the replication origin of the Escherichia coli K-12 chromosome | Q48376389 | ||
| Autoregulation of the DNA replication gene dnaA in E. coli K-12. | Q48384021 | ||
| Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancer. | Q50205588 | ||
| Bacillus subtilis YabA is involved in determining the timing and synchrony of replication initiation. | Q52564517 | ||
| The interaction domains of the DnaA and DnaB replication proteins of Escherichia coli. | Q52969912 | ||
| Functional domains of DnaA proteins. | Q52975761 | ||
| IHF-dependent activation of P1 plasmid origin by dnaA. | Q53585292 | ||
| Autoregulation of the dnaA gene of Escherichia coli K12. | Q54461902 | ||
| IHF and HU stimulate assembly of pre-replication complexes at Escherichia coli oriC by two different mechanisms. | Q54537153 | ||
| Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity. | Q54559175 | ||
| SeqA limits DnaA activity in replication from oriC in Escherichia coli. | Q54624698 | ||
| The bacterial origin of replication, oriC. | Q54776767 | ||
| The N-terminus promotes oligomerization of the Escherichia coli initiator protein DnaA | Q73129161 | ||
| Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids | Q73414046 | ||
| FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli | Q73947854 | ||
| The Escherichia coli SeqA protein binds specifically and co-operatively to two sites in hemimethylated and fully methylated oriC | Q74129959 | ||
| Membrane-mediated release of nucleotide from an initiator of chromosomal replication, Escherichia coli DnaA, occurs with insertion of a distinct region of the protein into the lipid bilayer | Q74230911 | ||
| Escherichia coli DnaA protein. The N-terminal domain and loading of DnaB helicase at the E. coli chromosomal origin | Q77677947 | ||
| Specific N-terminal interactions of the Escherichia coli SeqA protein are required to form multimers that restrain negative supercoils and form foci | Q81373833 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | bacteria | Q10876 |
| P304 | page(s) | 343-354 | |
| P577 | publication date | 2007-05-01 | |
| P1433 | published in | Nature Reviews Microbiology | Q1071797 |
| P1476 | title | DNA replication initiation: mechanisms and regulation in bacteria | |
| P478 | volume | 5 |
| Q36089377 | A DNA methylation ratchet governs progression through a bacterial cell cycle |
| Q43161101 | A DNA-binding activity in BPV initiator protein E1 required for melting duplex ori DNA but not processive helicase activity initiated on partially single-stranded DNA. |
| Q27652854 | A Structural Basis for the Regulatory Inactivation of DnaA |
| Q27649681 | A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin |
| Q43071382 | A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis |
| Q97421941 | A systematic strategy for the investigation of vaccines and drugs targeting bacteria |
| Q34233413 | AT-rich region and repeated sequences - the essential elements of replication origins of bacterial replicons. |
| Q36802539 | ATP negatively regulates the initiator protein of Vibrio cholerae chromosome II replication. |
| Q33580927 | Acetylation of Lysine 243 Inhibits the oriC Binding Ability of DnaA in Escherichia coli |
| Q43022450 | Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2. |
| Q37194838 | Archaeal eukaryote-like Orc1/Cdc6 initiators physically interact with DNA polymerase B1 and regulate its functions |
| Q35791501 | Architecture and conservation of the bacterial DNA replication machinery, an underexploited drug target |
| Q27667607 | Architectures of archaeal GINS complexes, essential DNA replication initiation factors |
| Q34264677 | Association of the chromosome replication initiator DnaA with the Escherichia coli inner membrane in vivo: quantity and mode of binding. |
| Q42032142 | Avoiding chromosome pathology when replication forks collide |
| Q39003514 | Bacterial DNA Methylation and Methylomes |
| Q41824949 | Bacterial initiators form dynamic filaments on single-stranded DNA monomer by monomer |
| Q37413476 | Bacterial origin recognition complexes direct assembly of higher-order DnaA oligomeric structures |
| Q33351258 | Bacterial protein interaction networks: puzzle stones from solved complex structures add to a clearer picture |
| Q38095298 | Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies |
| Q36580910 | Bacteriophage SPP1 DNA replication strategies promote viral and disable host replication in vitro |
| Q37712455 | Building the bacterial orisome: high-affinity DnaA recognition plays a role in setting the conformation of oriC DNA |
| Q36870565 | CRISPR-mediated control of the bacterial initiation of replication |
| Q38675712 | Capturing the genetic makeup of the active microbiome in situ |
| Q34109696 | Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function |
| Q35823597 | Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopy |
| Q34045486 | Changes in DnaA-dependent gene expression contribute to the transcriptional and developmental response of Bacillus subtilis to manganese limitation in Luria-Bertani medium. |
| Q36052744 | Characterization of Staphylococcus aureus Primosomal DnaD Protein: Highly Conserved C-Terminal Region Is Crucial for ssDNA and PriA Helicase Binding but Not for DnaA Protein-Binding and Self-Tetramerization |
| Q36308085 | Characterization of flavonol inhibition of DnaB helicase: real-time monitoring, structural modeling, and proposed mechanism |
| Q42371038 | Chlorinated emodin as a natural antibacterial agent against drug-resistant bacteria through dual influence on bacterial cell membranes and DNA. |
| Q34295716 | Chromosome Replication in Escherichia coli: Life on the Scales. |
| Q38197136 | Chromosome replication origins: do we really need them? |
| Q52630894 | Comparative analyses of the two proliferating cell nuclear antigens from the hyperthermophilic archaeon, Thermococcus kodakarensis. |
| Q33790403 | Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS). |
| Q36974654 | Complete genomes of two dipteran-associated spiroplasmas provided insights into the origin, dynamics, and impacts of viral invasion in spiroplasma |
| Q21563364 | Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution |
| Q41955522 | Conserved residues of the C-terminal p16 domain of primase are involved in modulating the activity of the bacterial primosome. |
| Q39079493 | Control of Initiation of DNA Replication in Bacillus subtilis and Escherichia coli. |
| Q34547145 | Control of bacterial chromosome replication by non-coding regions outside the origin. |
| Q38689989 | Control of the replication initiator DnaA by an anti-cooperativity factor |
| Q64100576 | Crosstalk Regulation Between Bacterial Chromosome Replication and Chromosome Partitioning |
| Q38944970 | Cryo-EM of dynamic protein complexes in eukaryotic DNA replication |
| Q57029707 | Cryptic protein interactions regulate DNA replication initiation |
| Q27684793 | Crystal structure of DnaT 84–153 -dT10 ssDNA complex reveals a novel single-stranded DNA binding mode |
| Q33922389 | DNA linking number change induced by sequence-specific DNA-binding proteins |
| Q38913885 | DNA methyltransferases and epigenetic regulation in bacteria |
| Q36194928 | DNA repair and genome maintenance in Bacillus subtilis |
| Q40751678 | DNA replication and strand asymmetry in prokaryotic and mitochondrial genomes |
| Q90390028 | DNA replication initiation in Bacillus subtilis: structural and functional characterization of the essential DnaA-DnaD interaction |
| Q33569155 | DNA replication origins in archaea |
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| Q42576825 | DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading. |
| Q43023357 | Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum. |
| Q35826219 | Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella-Like Endosymbionts in Ticks |
| Q42450615 | Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method |
| Q36959024 | Diverged composition and regulation of the Trypanosoma brucei origin recognition complex that mediates DNA replication initiation |
| Q33871082 | DnaB proteolysis in vivo regulates oligomerization and its localization at oriC in Bacillus subtilis |
| Q44902851 | DnaT is a single-stranded DNA binding protein |
| Q36491411 | DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes. |
| Q43203819 | Dynamic association of the replication initiator and transcription factor DnaA with the Bacillus subtilis chromosome during replication stress |
| Q37581233 | Dynamic chromosome organization and protein localization coordinate the regulatory circuitry that drives the bacterial cell cycle |
| Q51004577 | E. coli Cell Cycle Machinery. |
| Q90101078 | Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase |
| Q35539851 | End of the beginning: elongation and termination features of alternative modes of chromosomal replication initiation in bacteria |
| Q36459168 | Energetics and geometry of FtsZ polymers: nucleated self-assembly of single protofilaments |
| Q48591314 | Enhanced protein and biochemical production using CRISPRi-based growth switches |
| Q35102721 | Environmental adaptability and stress tolerance of Laribacter hongkongensis: a genome-wide analysis. |
| Q36047612 | Escherichia coli Chromosome Copy Number Measurement Using Flow Cytometry Analysis |
| Q30494952 | Escherichia coli DnaA forms helical structures along the longitudinal cell axis distinct from MreB filaments |
| Q33909111 | Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp |
| Q34139588 | Eukaryotic DNA replication origins: many choices for appropriate answers |
| Q36162251 | Evidence for roles of the Escherichia coli Hda protein beyond regulatory inactivation of DnaA. |
| Q33377709 | Evolution of genome architecture |
| Q38103341 | Evolutionary cell biology of chromosome segregation: insights from trypanosomes |
| Q38084167 | Extrachromosomal, extraordinary and essential--the plasmids of the Roseobacter clade |
| Q41510951 | Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome |
| Q37333324 | Feedback control of DnaA-mediated replication initiation by replisome-associated HdaA protein in Caulobacter. |
| Q34152536 | Folded DNA in action: hairpin formation and biological functions in prokaryotes. |
| Q28486513 | Functional characterization of DnaB helicase and its modulation by single-stranded DNA binding protein in Mycobacterium tuberculosis |
| Q47172086 | Fundamental Principles in Bacterial Physiology - History, Recent progress, and the Future with Focus on Cell Size Control: A Review |
| Q50350067 | Genetic and biochemical interactions between the bacterial replication initiator DnaA and the nucleoid-associated protein Rok in Bacillus subtilis. |
| Q48017802 | Genetic networks controlled by the bacterial replication initiator and transcription factor DnaA in Bacillus subtilis. |
| Q39801755 | Genome sequence and characterization of the Tsukamurella bacteriophage TPA2 |
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| Q27311279 | Genomic location of the major ribosomal protein gene locus determines Vibrio cholerae global growth and infectivity |
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| Q35644778 | In Vitro Whole Genome DNA Binding Analysis of the Bacterial Replication Initiator and Transcription Factor DnaA. |
| Q42184757 | Individual basepair stability of DNA and RNA studied by NMR-detected solvent exchange |
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| Q89899831 | Laboratory Evolution Experiments Help Identify a Predominant Region of Constitutive Stable DNA Replication Initiation |
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| Q28547000 | Lysis to Kill: Evaluation of the Lytic Abilities, and Genomics of Nine Bacteriophages Infective for Gordonia spp. and Their Potential Use in Activated Sludge Foam Biocontrol |
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| Q52661262 | Mycobacterium tuberculosis class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III exhibits DNA regulated modes of interaction with the sliding DNA β-clamp. |
| Q64247497 | NapM enhances the survival of under stress and in macrophages |
| Q39109316 | Non-Canonical Replication Initiation: You're Fired! |
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| Q37075862 | Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells. |
| Q37746463 | Organization of DNA replication |
| Q37792588 | Origin DNA melting and unwinding in DNA replication |
| Q36642467 | Origin activation requires both replicative and accessory helicases during T4 infection |
| Q34107456 | Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator |
| Q64963817 | Origins Left, Right, and Centre: Increasing the Number of Initiation Sites in the Escherichia coli Chromosome. |
| Q40078731 | Overexpression of the Replicative Helicase in Escherichia coli Inhibits Replication Initiation and Replication Fork Reloading. |
| Q38568949 | Preparing to unwind |
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| Q42572155 | Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis |
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| Q88076867 | Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects |
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| Q33808484 | Quantification of cytosolic plasmid DNA degradation using high-throughput sequencing: implications for gene delivery |
| Q91678290 | Real-time monitoring of protein-induced DNA conformational changes using single-molecule FRET |
| Q33565341 | Recent Advances in the Identification of Replication Origins Based on the Z-curve Method |
| Q47735172 | Recent development of Ori-Finder system and DoriC database for microbial replication origins |
| Q28080460 | Redefining bacterial origins of replication as centralized information processors |
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| Q37884602 | Regulation of DnaA assembly and activity: taking directions from the genome |
| Q34055908 | Regulation of the activity of the dual-function DnaA protein in Caulobacter crescentus |
| Q53341848 | Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. |
| Q33979562 | Regulatory cross-talk links Vibrio cholerae chromosome II replication and segregation. |
| Q37274980 | Replication initiator DnaA of Escherichia coli changes its assembly form on the replication origin during the cell cycle. |
| Q37588219 | Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics. |
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| Q37147957 | Reversible lysine acetylation is involved in DNA replication initiation by regulating activities of initiator DnaA in Escherichia coli |
| Q26861945 | Roles of DNA helicases in the maintenance of genome integrity |
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| Q37912224 | Screening strategies for discovery of antibacterial natural products |
| Q35775653 | Skin-Derived C-Terminal Filaggrin-2 Fragments Are Pseudomonas aeruginosa-Directed Antimicrobials Targeting Bacterial Replication |
| Q42064896 | Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells |
| Q42027915 | Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA. |
| Q34462338 | Spatial and temporal organization of chromosome duplication and segregation in the cyanobacterium Synechococcus elongatus PCC 7942. |
| Q46599290 | Spatiotemporal choreography of chromosome and megaplasmids in the Sinorhizobium meliloti cell cycle. |
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| Q42575634 | Structural insight into Helicobacter pylori DNA replication initiation |
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| Q52656083 | The Macromolecular Machines that Duplicate the Escherichia coli Chromosome as Targets for Drug Discovery. |
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| Q38288670 | The RecJ2 protein in the thermophilic archaeon Thermoplasma acidophilum is a 3'-5' exonuclease that associates with a DNA replication complex. |
| Q33737449 | The Role of the N-Terminal Domains of Bacterial Initiator DnaA in the Assembly and Regulation of the Bacterial Replication Initiation Complex |
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| Q33580258 | The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators |
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