Empirical entropic contributions in computational docking: evaluation in APS reductase complexes.

scientific article

Empirical entropic contributions in computational docking: evaluation in APS reductase complexes. is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/jcc/ChangBCOG08
P356DOI10.1002/JCC.20936
P932PMC publication ID3052286
P698PubMed publication ID18351616
P5875ResearchGate publication ID5500033

P50authorKate CarrollQ6375417
David GoodsellQ19878497
Max W ChangQ56843229
P2093author name stringArthur J Olson
Richard K Belew
P2860cites workA conserved mechanism for sulfonucleotide reductionQ24811125
Iterative partial equalization of orbital electronegativity—a rapid access to atomic chargesQ28096294
A Nonlinear Mapping for Data Structure AnalysisQ29396878
A semiempirical free energy force field with charge-based desolvationQ29614316
Evaluating conformational free energies: the colony energy and its application to the problem of loop predictionQ34064011
Substrate recognition, protein dynamics, and iron-sulfur cluster in Pseudomonas aeruginosa adenosine 5'-phosphosulfate reductase.Q35585311
Ligand configurational entropy and protein bindingQ35607011
A comparative study on the application of hierarchical-agglomerative clustering approaches to organize outputs of reiterated docking runs.Q51630937
New and fast statistical-thermodynamic method for computation of protein-ligand binding entropy substantially improves docking accuracy.Q51633573
Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modelingQ57976077
Role of binding entropy in the refinement of protein-ligand docking predictions: analysis based on the use of 11 scoring functionsQ79890296
Novel statistical-thermodynamic methods to predict protein-ligand binding positions using probability distribution functionsQ81478489
P433issue11
P304page(s)1753-1761
P577publication date2008-08-01
P1433published inJournal of Computational ChemistryQ3186908
P1476titleEmpirical entropic contributions in computational docking: evaluation in APS reductase complexes
P478volume29

Reverse relations

cites work (P2860)
Q42557837A force field with discrete displaceable waters and desolvation entropy for hydrated ligand docking
Q34377911Advances and challenges in protein-ligand docking
Q27860652AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
Q48247332Automatic clustering of docking poses in virtual screening process using self-organizing map.
Q28391435Configurational entropy in protein-peptide binding: computational study of Tsg101 ubiquitin E2 variant domain with an HIV-derived PTAP nonapeptide
Q30607323Docking challenge: protein sampling and molecular docking performance
Q35211087Efficient incorporation of protein flexibility and dynamics into molecular docking simulations
Q38437117Functional Site Discovery in a Sulfur Metabolism Enzyme by Using Directed Evolution.
Q35419556Inclusion of solvation and entropy in the knowledge-based scoring function for protein-ligand interactions
Q33832481Integrative computational protocol for the discovery of inhibitors of the Helicobacter pylori nickel response regulator (NikR).
Q37090637Structure-based virtual screening and biological evaluation of Mycobacterium tuberculosis adenosine 5'-phosphosulfate reductase inhibitors
Q28383645Theory of free energy and entropy in noncovalent binding
Q51083951Validation of a computational docking methodology to identify the non-covalent binding site of ligands to DNA.
Q34867648Virtual Screening with AutoDock: Theory and Practice

Search more.