Comparative transcriptome analysis of Methylibium petroleiphilum PM1 exposed to the fuel oxygenates methyl tert-butyl ether and ethanol

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Comparative transcriptome analysis of Methylibium petroleiphilum PM1 exposed to the fuel oxygenates methyl tert-butyl ether and ethanol is …
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scholarly articleQ13442814

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P356DOI10.1128/AEM.01604-07
P932PMC publication ID2168209
P698PubMed publication ID17890343

P2093author name stringPatrick S Chain
Anu Y Chakicherla
Kate M Scow
Krassimira R Hristova
Radomir Schmidt
Staci R Kane
Tina C Legler
Janice Wu
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Summaries of Affymetrix GeneChip probe level dataQ27860888
Biodegradation of the gasoline oxygenates methyl tert-butyl ether, ethyl tert-butyl ether, and tert-amyl methyl ether by propane-oxidizing bacteriaQ28379205
Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteriaQ28486383
Methanoarchaeal sulfolactate dehydrogenase: prototype of a new family of NADH-dependent enzymesQ30912031
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Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the BetaproteobacteriaQ31037227
Molecular cloning and DNA sequencing of the Escherichia coli K-12 ald gene encoding aldehyde dehydrogenaseQ33403863
Biodegradation of methyl tert-butyl ether by a bacterial pure culture.Q33985927
Detection and quantification of methyl tert-butyl ether-degrading strain PM1 by real-time TaqMan PCR.Q33990676
Aerobic biodegradation of methyl tert-butyl ether by aquifer bacteria from leaking underground storage tank sitesQ33990961
A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp. strain RW1.Q33992155
Toxicology and human health effects following exposure to oxygenated or reformulated gasolineQ34407537
Differential expression of two catechol 1,2-dioxygenases in Burkholderia sp. strain TH2.Q34436435
Cometabolism of methyl tertiary butyl ether and gaseous n-alkanes by Pseudomonas mendocina KR-1 grown on C5 to C8 n-alkanesQ34997506
The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compoundsQ35172600
Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.Q35759397
MTBE and gasoline hydrocarbons in ground water of the United StatesQ36200358
Plasmid- and chromosome-mediated dissimilation of naphthalene and salicylate in Pseudomonas putida PMD-1Q36307881
Oxidation of methyl tert-butyl ether by alkane hydroxylase in dicyclopropylketone-induced and n-octane-grown Pseudomonas putida GPo1.Q37044828
The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradationQ37583361
Gene structures and regulation of the alkane hydroxylase complex in Acinetobacter sp. strain M-1.Q39502904
MTBE (methyl tertiary-butyl ether) in groundwaters: monitoring results from GermanyQ39601583
Characterization of the initial reactions during the cometabolic oxidation of methyl tert-butyl ether by propane-grown Mycobacterium vaccae JOB5.Q39708586
Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosaQ39749010
Naturally Occurring Bacteria Similar to the Methyl tert -Butyl Ether (MTBE)-Degrading Strain PM1 Are Present in MTBE-Contaminated GroundwaterQ39750550
Physiological changes and alk gene instability in Pseudomonas oleovorans during induction and expression of alk genesQ39842779
Oxidation of nitrotoluenes by toluene dioxygenase: evidence for a monooxygenase reactionQ39894521
Induction of methyl tertiary butyl ether (MTBE)-oxidizing activity in Mycobacterium vaccae JOB5 by MTBEQ40603914
The alkyl tert-butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway.Q41478544
Genes involved in the methyl tert-butyl ether (MTBE) metabolic pathway of Mycobacterium austroafricanum IFP 2012.Q42683430
Substrate interactions in BTEX and MTBE mixtures by an MTBE-degrading isolateQ43603662
Identification and characterization of the AgmR regulator of Pseudomonas putida: role in alcohol utilizationQ43960104
Molecular and functional characterization of the kstD2 gene of Rhodococcus erythropolis SQ1 encoding a second 3-ketosteroid Delta(1)-dehydrogenase isoenzymeQ44170714
Small-volume releases of gasoline in the vadose zone: impact of the additives MTBE and ethanol on groundwater qualityQ44464935
Effect of in situ parameters on the enrichment process of MTBE degrading organisms.Q45160224
The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline.Q45161133
The mutagenicity testing of tertiary-butyl alcohol, tertiary-butyl acetate and methyl tertiary-butyl ether in Salmonella typhimurium.Q45231797
Impact of ethanol on the natural attenuation of MTBE in a normally sulfate-reducing aquiferQ46907977
Novel pollutant-resistant methylotrophic bacteria for use in bioremediationQ48193563
Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genesQ48361687
Effect of methyl tert-butyl ether in standard tests for mutagenicity and environmental toxicityQ50075716
Involvement of lactaldehyde dehydrogenase in several metabolic pathways of Escherichia coli K12Q68189155
Toxicity and carcinogenicity of t-butyl alcohol in rats and mice following chronic exposure in drinking waterQ71568481
Identification of catalytically essential residues in Escherichia coli esterase by site-directed mutagenesisQ78081330
Peer Reviewed: MTBE-To What Extent Will Past Releases Contaminate Community Water Supply Wells?Q84329438
P4510describes a project that usesImageJQ1659584
limmaQ112236343
P433issue22
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
P304page(s)7347-7357
P577publication date2007-09-21
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleComparative transcriptome analysis of Methylibium petroleiphilum PM1 exposed to the fuel oxygenates methyl tert-butyl ether and ethanol
P478volume73

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cites work (P2860)
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Q44560826Identification of tertiary butyl alcohol (TBA)-utilizing organisms in BioGAC reactors using 13C-DNA stable isotope probing
Q36958138Involvement of a novel enzyme, MdpA, in methyl tert-butyl ether degradation in Methylibium petroleiphilum PM1
Q37631330Successful treatment of an MTBE-impacted aquifer using a bioreactor self-colonized by native aquifer bacteria
Q42244121Synthesis of short-chain diols and unsaturated alcohols from secondary alcohol substrates by the Rieske nonheme mononuclear iron oxygenase MdpJ.
Q37514133The expanding world of methylotrophic metabolism

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