Multi-haem cytochromes in Shewanella oneidensis MR-1: structures, functions and opportunities

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Multi-haem cytochromes in Shewanella oneidensis MR-1: structures, functions and opportunities is …
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review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1098/RSIF.2014.1117
P932PMC publication ID4277109
P698PubMed publication ID25411412
P5875ResearchGate publication ID270514205

P50authorJulea N ButtQ47504381
P2093author name stringKevin M Rosso
Jochen Blumberger
Marian Breuer
P2860cites workGenome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensisQ22122107
Direct assignment of EPR spectra to structurally defined iron-sulfur clusters in complex I by double electron-electron resonanceQ24645274
A hybrid approach to simulation of electron transfer in complex molecular systemsQ26823245
Open conformation of a flavocytochrome c3 fumarate reductaseQ27620545
Structure and mechanism of the flavocytochrome c fumarate reductase of Shewanella putrefaciens MR-1Q27620551
Shewanella--the environmentally versatile genomeQ43358567
Protein electron transfer: Dynamics and statisticsQ43778317
Photoinduced electron transfer between cytochrome c peroxidase and yeast cytochrome c labeled at Cys 102 with (4-bromomethyl-4'-methylbipyridine)[bis(bipyridine)]ruthenium2+Q44364855
The tetraheme cytochrome CymA is required for anaerobic respiration with dimethyl sulfoxide and nitrite in Shewanella oneidensisQ44537544
Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligationQ45054559
The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1.Q45730831
Heme proteins--diversity in structural characteristics, function, and foldingQ45736215
Tuning of functional heme reduction potentials in Shewanella fumarate reductasesQ46199202
Multistep hopping and extracellular charge transfer in microbial redox chains.Q46461761
The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interfaceQ46514318
Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA.Q47959657
Correlations of structure and electronic properties from EPR spectroscopy of hydroxylamine oxidoreductase.Q49314708
Free energy calculation of water addition coupled to reduction of aqueous RuO4-.Q50086825
Electron tunneling chains of mitochondria.Q51179372
Kinetics of the terminal electron transfer step in cytochrome c oxidase.Q51451611
Free energies for biological electron transfer from QM/MM calculation: method, application and critical assessment.Q51619827
A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility in Shewanella.Q53097701
Thermodynamics of electron flow in the bacterial deca-heme cytochrome MtrF.Q53100552
Mapping the iron binding site(s) on the small tetraheme cytochrome of Shewanella oneidensis MR-1.Q53419842
Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1.Q53484066
High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 outer membrane c-type cytochrome OmcA.Q53591817
Structural dynamics in the plastocyanin-photosystem 1 electron-transfer complex as revealed by mutant studies.Q54594966
Mechanisms for Fe(III) Oxide Reduction in Sedimentary EnvironmentsQ56594198
Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulationsQ57975313
The Role of Shewanella oneidensis MR-1 Outer Surface Structures in Extracellular Electron TransferQ58022569
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolutionQ27632715
The 1.25 A resolution structure of the diheme NapB subunit of soluble nitrate reductase reveals a novel cytochrome c fold with a stacked heme arrangementQ27638801
Crystal structures at atomic resolution reveal the novel concept of "electron-harvesting" as a role for the small tetraheme cytochrome cQ27639238
Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMRQ27643211
The crystal structure of the pentahaem c -type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfAQ27644851
Structure of a bacterial cell surface decaheme electron conduitQ27667964
Investigation of the Electron Transport Chain to and the Catalytic Activity of the Diheme Cytochrome c Peroxidase CcpA of Shewanella oneidensisQ27670747
Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression systemQ27677551
The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelatesQ27679558
Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigasQ27730367
Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridisQ27730386
X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolutionQ27766099
Microbial fuel cells: novel biotechnology for energy generationQ28253332
The octahaem SirA catalyses dissimilatory sulfite reduction in Shewanella oneidensis MR-1Q28487955
Characterization of an electron conduit between bacteria and the extracellular environmentQ30157016
Menaquinone-7 is specific cofactor in tetraheme quinol dehydrogenase CymA.Q30467920
Probing electron transfer mechanisms in Shewanella oneidensis MR-1 using a nanoelectrode platform and single-cell imaging.Q30496814
Mechanisms of electron transfer in two decaheme cytochromes from a metal-reducing bacteriumQ33302840
In vitro evolution of a peptide with a hematite binding motif that may constitute a natural metal-oxide binding archetypeQ33342949
The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensisQ33586066
Towards electrosynthesis in shewanella: energetics of reversing the mtr pathway for reductive metabolismQ33818153
Natural engineering principles of electron tunnelling in biological oxidation-reductionQ33881476
Characterization of the decaheme c-type cytochrome OmcA in solution and on hematite surfaces by small angle x-ray scattering and neutron reflectometryQ33908435
Activationless electron transfer through the hydrophobic core of cytochrome c oxidaseQ33911521
Substrate-level phosphorylation is the primary source of energy conservation during anaerobic respiration of Shewanella oneidensis strain MR-1.Q33964271
Role of the tetraheme cytochrome CymA in anaerobic electron transport in cells of Shewanella putrefaciens MR-1 with normal levels of menaquinoneQ33993399
How to make a living from anaerobic ammonium oxidation.Q34034634
Long-range protein electron transfer observed at the single-molecule level: In situ mapping of redox-gated tunneling resonanceQ34114464
Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport componentsQ34144770
Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteinsQ34178775
Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1.Q34241189
Engineering of a synthetic electron conduit in living cellsQ34320464
Electrobiocommodities: powering microbial production of fuels and commodity chemicals from carbon dioxide with electricityQ34331290
A systematic investigation of multiheme c-type cytochromes in prokaryotesQ58484019
Mind the gap: cytochrome interactions reveal electron pathways across the periplasm ofShewanella oneidensisMR-1Q59600328
Efficient and selective isotopic labeling of hemes to facilitate the study of multiheme proteinsQ59600336
Tools for resolving complexity in the electron transfer networks of multiheme cytochromes cQ59829160
On conducting electron traffic across the periplasm: Figure 1Q59941548
Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1Q59941552
Proton Transfer Drives Protein Radical Formation in Helicobacter pylori Catalase but Not in Penicillium vitale CatalaseQ60462826
I. Langmuir-blodgett monolayer films of bacterial photosynthetic membranes and isolated reaction centers: preparation, spectrophotometric and electrochemical characterizationQ67915169
Control of formation and dissociation of the high-affinity complex between cytochrome c and cytochrome c peroxidase by ionic strength and the low-affinity binding siteQ71878558
Optical spectropotentiometric resolution of the hemes of hydroxylamine oxidoreductase. Heme quantitation and pH dependence of EmQ72816646
Complex of plastocyanin and cytochrome c characterized by NMR chemical shift analysisQ73395681
Transient protein interactions studied by NMR spectroscopy: the case of cytochrome C and adrenodoxinQ73499928
How cytochromes with different folds control heme redox potentialsQ73821156
Probing potential-tuned resonant tunneling through redox molecules with scanning tunneling microscopyQ74567858
Dynamics of protein-protein docking: cytochrome c and cytochrome c peroxidase revisitedQ77618620
Spectroscopic characterization and assignment of reduction potentials in the tetraheme cytochrome C554 from Nitrosomonas europaeaQ78966050
Extracting electron transfer coupling elements from constrained density functional theoryQ79339230
Electronic coupling between heme electron-transfer centers and its decay with distance depends strongly on relative orientationQ80048473
An octaheme c-type cytochrome from Shewanella oneidensis can reduce nitrite and hydroxylamineQ80690808
Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptorsQ80800490
Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptorQ81131636
Redox equilibria in hydroxylamine oxidoreductase. Electrostatic control of electron redistribution in multielectron oxidative processesQ81372949
Electronic coupling matrix elements from charge constrained density functional theory calculations using a plane wave basis setQ83093736
Insight into the mechanism of the Ru2+-Ru3+ electron self-exchange reaction from quantitative rate calculationsQ84062632
Charge constrained density functional molecular dynamics for simulation of condensed phase electron transfer reactionsQ84429449
Energy Levels and Redox Properties of Aqueous Mn2+/3+ from Photoemission Spectroscopy and Density Functional Molecular Dynamics SimulationQ84606304
Revisiting electronic couplings and incoherent hopping models for electron transport in crystalline C60 at ambient temperaturesQ84714860
Enhanced performance of hexavalent chromium reducing cathodes in the presence of Shewanella oneidensis MR-1 and lactateQ86445986
Ultrafast Estimation of Electronic Couplings for Electron Transfer between π-Conjugated Organic MoleculesQ86749220
Electronic couplings for molecular charge transfer: benchmarking CDFT, FODFT, and FODFTB against high-level ab initio calculationsQ87440184
ElectromicrobiologyQ38022665
Mitochondrial complex I.Q38092859
Unveiling the details of electron transfer in multicenter redox proteinsQ38132221
Efficient docking of peptides to proteins without prior knowledge of the binding siteQ38270145
Photoemission spectra and density functional theory calculations of 3d transition metal-aqua complexes (Ti-Cu) in aqueous solutionQ39180232
Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF.Q39515316
Single-ion reorganization free energy of aqueous Ru(bpy)32+/3+ and Ru(H2O)62+/3+ from photoemission spectroscopy and density functional molecular dynamics simulationQ39938425
Reduction of polymeric azo and nitro dyes by intestinal bacteriaQ40080464
Mössbauer spectroscopy on respiratory complex I: the iron-sulfur cluster ensemble in the NADH-reduced enzyme is partially oxidizedQ40259701
Blind docking of drug-sized compounds to proteins with up to a thousand residuesQ40352786
Iron and manganese in anaerobic respiration: environmental significance, physiology, and regulationQ40572933
X-ray structure of the membrane-bound cytochrome c quinol dehydrogenase NrfH reveals novel haem coordinationQ41092772
Architecture of mammalian respiratory complex I.Q41607512
Kinetic characterization of OmcA and MtrC, terminal reductases involved in respiratory electron transfer for dissimilatory iron reduction in Shewanella oneidensis MR-1Q41815139
Pigment-protein interactions in the photosynthetic reaction centre from Rhodopseudomonas viridisQ41819562
Electrostatics of the FeS clusters in respiratory complex I.Q41945131
Redox intermediates of Desulfovibrio gigas [NiFe] hydrogenase generated under hydrogen. Mössbauer and EPR characterization of the metal centersQ42052753
Distance metrics for heme protein electron tunnelingQ42070773
Shewanella oneidensis MR-1 uses overlapping pathways for iron reduction at a distance and by direct contact under conditions relevant for Biofilms.Q42104878
Coupling coherence distinguishes structure sensitivity in protein electron transferQ42412291
MCCE2: improving protein pKa calculations with extensive side chain rotamer samplingQ42541149
Prediction of reorganization free energies for biological electron transfer: a comparative study of Ru-modified cytochromes and a 4-helix bundle proteinQ42835677
Involvement and specificity of Shewanella oneidensis outer membrane cytochromes in the reduction of soluble and solid-phase terminal electron acceptors.Q43108406
Role of outer-membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1.Q43225473
Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1Q34540409
Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganismsQ34548796
Cytochrome c: occurrence and functionsQ34564050
Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1.Q34574919
Iron-sulfur clusters/semiquinones in complex I.Q34747335
Electrochemical measurement of electron transfer kinetics by Shewanella oneidensis MR-1Q34996011
Identification and characterization of UndAHRCR-6, an outer membrane endecaheme c-type cytochrome of Shewanella sp. strain HRCR-6.Q35139037
Solution-based structural analysis of the decaheme cytochrome, MtrA, by small-angle X-ray scattering and analytical ultracentrifugation.Q35227113
Electron tunneling through proteinsQ35695856
Specific bonds between an iron oxide surface and outer membrane cytochromes MtrC and OmcA from Shewanella oneidensis MR-1.Q35879446
Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromesQ35987337
Physical constraints on charge transport through bacterial nanowiresQ36082883
Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1.Q36136756
Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutantsQ36136880
Shewanella secretes flavins that mediate extracellular electron transferQ36499060
Protein-ligand docking: current status and future challengesQ36544700
Darwin at the molecular scale: selection and variance in electron tunnelling proteins including cytochrome c oxidaseQ36549091
Direct electrochemistry of Shewanella oneidensis cytochrome c nitrite reductase: evidence of interactions across the dimeric interfaceQ36593546
Rapid electron injection into multisite metalloproteins: intramolecular electron transfer in cytochrome oxidaseQ36703466
Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals.Q36782196
Design of a ruthenium-cytochrome c derivative to measure electron transfer to the radical cation and oxyferryl heme in cytochrome c peroxidase.Q36835277
Rate enhancement of bacterial extracellular electron transport involves bound flavin semiquinonesQ36835692
In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkersQ36978992
Ecology and biotechnology of the genus ShewanellaQ37012817
Towards environmental systems biology of ShewanellaQ37208297
Protein-protein interaction regulates the direction of catalysis and electron transfer in a redox enzyme complex.Q37295041
Anaerobic respiration of elemental sulfur and thiosulfate by Shewanella oneidensis MR-1 requires psrA, a homolog of the phsA gene of Salmonella enterica serovar typhimurium LT2.Q37301665
Computations of standard binding free energies with molecular dynamics simulationsQ37335295
Electron flow in multiheme bacterial cytochromes is a balancing act between heme electronic interaction and redox potentialsQ37495092
Electrostatic control of midpoint potentials in the cytochrome subunit of the Rhodopseudomonas viridis reaction centerQ37607518
Electron transfer between hemes in mammalian cytochrome c oxidase.Q37621570
The role of intramolecular interactions in the functional control of multiheme cytochromes c.Q37920363
Shuttling happens: soluble flavin mediators of extracellular electron transfer in ShewanellaQ37954557
The 'porin-cytochrome' model for microbe-to-mineral electron transfer.Q38014562
P433issue102
P407language of work or nameEnglishQ1860
P921main subjectShewanella oneidensisQ4049396
P304page(s)20141117
P577publication date2015-01-01
P1433published inJournal of the Royal Society InterfaceQ2492390
P1476titleMulti-haem cytochromes in Shewanella oneidensis MR-1: structures, functions and opportunities
P478volume12

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