Inter- and intra-host viral diversity in a large seasonal DENV2 outbreak

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Inter- and intra-host viral diversity in a large seasonal DENV2 outbreak is …
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scholarly articleQ13442814

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P819ADS bibcode2013PLoSO...870318R
P356DOI10.1371/JOURNAL.PONE.0070318
P932PMC publication ID3732279
P698PubMed publication ID23936406
P5875ResearchGate publication ID255737614

P50authorJosé Eduardo LeviQ69525289
Camila M RomanoQ91215755
Lucy Santos Villas-BoasQ114300997
Claudio Sergio PannutiQ114300999
David H. O’ConnorQ28321062
Esper Georges KallasQ30153142
P2093author name stringEvaldo Stanislau A Araújo
Michael Lauck
Célia Rodrigues Lima
Felipe S Salvador
P2860cites workMUSCLE: a multiple sequence alignment method with reduced time and space complexityQ21284290
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
SIV genome-wide pyrosequencing provides a comprehensive and unbiased view of variation within and outside CD8 T lymphocyte epitopesQ27313564
Genetic and fitness changes accompanying adaptation of an arbovirus to vertebrate and invertebrate cellsQ27469361
Dengue Type 3 Virus in Plasma Is a Population of Closely Related Genomes: QuasispeciesQ27473511
Cost-Effective Real-Time Reverse Transcriptase PCR (RT-PCR) To Screen for Dengue Virus followed by Rapid Single-Tube Multiplex RT-PCR for Serotyping of the VirusQ27478185
Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue VirusQ27485426
Arbovirus evolution in vivo is constrained by host alternationQ27486082
Molecular and Epidemiologic Analysis of Dengue Virus Isolates from SomaliaQ27487900
Mosquitoes Put the Brake on Arbovirus Evolution: Experimental Evolution Reveals Slower Mutation Accumulation in Mosquito Than Vertebrate CellsQ27488421
Dengue 1 Diversity and Microevolution, French Polynesia 2001–2006: Connection with Epidemiology and ClinicsQ27488945
jModelTest: phylogenetic model averagingQ27860610
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
Datamonkey: rapid detection of selective pressure on individual sites of codon alignmentsQ29615126
Rates of evolutionary change in viruses: patterns and determinantsQ29616174
Unifying the epidemiological and evolutionary dynamics of pathogensQ29619092
The outcome of acute hepatitis C predicted by the evolution of the viral quasispeciesQ29619723
Intra- and interhost evolutionary dynamics of equine influenza virusQ30388851
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infectionQ30469621
Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing.Q30501204
Dengue and dengue hemorrhagic fever among adults: clinical outcomes related to viremia, serotypes, and antibody responseQ33378614
Characterization of Dengue virus type 2: new insights on the 2010 Brazilian epidemicQ33646681
C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference ResponseQ33737835
Frameshift mutation, microsatellites and mismatch repairQ33791245
Defective interfering viral particles in acute dengue infectionsQ33894951
Comparison of sequence reads obtained from three next-generation sequencing platformsQ33911299
Clinical significance of hepatitis C virus genotypes and quasispecies.Q33969076
Theoretical analysis of mutation hotspots and their DNA sequence context specificityQ34218124
Whole-genome characterization of human and simian immunodeficiency virus intrahost diversity by ultradeep pyrosequencingQ34295986
High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infectionsQ35665847
Highly pathogenic avian influenza virus subtype H5N1 escaping neutralization: more than HA variationQ35689647
Use of illumina deep sequencing technology to differentiate hepatitis C virus variantsQ35806939
Analysis of hepatitis C virus intrahost diversity across the coding region by ultradeep pyrosequencingQ35826862
Experimental analysis of sources of error in evolutionary studies based on Roche/454 pyrosequencing of viral genomesQ35930289
Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversityQ36172100
Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populationsQ37139125
Use of an immunoglobulin G avidity test to discriminate between primary and secondary dengue virus infectionsQ38967313
Evolution, dispersal and replacement of American genotype dengue type 2 viruses in India (1956-2005): selection pressure and molecular clock analysesQ40373757
Long-term transmission of defective RNA viruses in humans and Aedes mosquitoesQ40488747
Molecular characterization of dengue viruses type 1 and 2 isolated from a concurrent human infection.Q40558990
Sequence diversity of the capsid gene and the nonstructural gene NS2B of dengue-3 virus in vivoQ40569150
Two lineages of dengue virus type 2, BrazilQ42553157
Dengue virus serotype 4, Roraima State, BrazilQ42553577
High-resolution structure of an HIV-1 quasispecies: identification of novel coding sequencesQ42606271
Interactive analysis of phylogeny and character evolution using the computer program MacClade.Q45981407
An individual with a high prevalence of a tat-defective provirus in peripheral bloodQ46141873
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue8
P407language of work or nameEnglishQ1860
P921main subjectDENV-2Q106411491
P304page(s)e70318
P577publication date2013-08-02
P1433published inPLOS OneQ564954
P1476titleInter- and intra-host viral diversity in a large seasonal DENV2 outbreak
P478volume8

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cites work (P2860)
Q38825543Antibodies are not required to a protective immune response against dengue virus elicited in a mouse encephalitis model
Q97420738Application of Next-Generation Sequencing to Reveal How Evolutionary Dynamics of Viral Population Shape Dengue Epidemiology
Q38255509Biochemistry and medicinal chemistry of the dengue virus protease
Q35859712Complete Genome Sequence of an Atypical Dengue Virus Serotype 2 Lineage Isolated in Brazil
Q66679531Endless Forms: Within-Host Variation in the Structure of the West Nile Virus RNA Genome during Serial Passage in Bird Hosts
Q30977532Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data
Q28073351Genomic approaches for understanding dengue: insights from the virus, vector, and host
Q34456984High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities
Q36811991Increasing Clinical Severity during a Dengue Virus Type 3 Cuban Epidemic: Deep Sequencing of Evolving Viral Populations
Q57030909Inter- and intra-host sequence diversity reveal the emergence of viral variants during an overwintering epidemic caused by dengue virus serotype 2 in southern Taiwan
Q27334417Intra-epidemic evolutionary dynamics of a Dengue virus type 1 population reveal mutant spectra that correlate with disease transmission
Q35840938Nature and Extent of Genetic Diversity of Dengue Viruses Determined by 454 Pyrosequencing
Q34506663Restriction of Francisella novicida genetic diversity during infection of the vector midgut
Q36394066Serum from dengue virus-infected patients with and without plasma leakage differentially affects endothelial cells barrier function in vitro
Q63246368Tracking dengue virus type 1 genetic diversity during lineage replacement in an hyperendemic area in Colombia
Q67615538Transgenic Aedes aegypti Mosquitoes Transfer Genes into a Natural Population
Q54226258Understanding dengue virus evolution to support epidemic surveillance and counter-measure development.
Q36420801West Nile Virus Population Structure, Injury, and Interferon-Stimulated Gene Expression in the Brain From a Fatal Case of Encephalitis

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