Rev response elements (RRE) in lentiviruses: an RNAMotif algorithm-based strategy for RRE prediction

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Rev response elements (RRE) in lentiviruses: an RNAMotif algorithm-based strategy for RRE prediction is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1002/MED.10027
P698PubMed publication ID12369091

P2093author name stringDavid J Ecker
Ranga Sampath
Elena A Lesnik
P2860cites workTHE HIV-1 REV PROTEINQ22241975
Visna virus encodes a post-transcriptional regulator of viral structural gene expressionQ24557218
The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variabilityQ27622350
Peptide-triggered conformational switch in HIV-1 RRE RNA complexesQ27629539
Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complexQ27733230
Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complexQ27734070
Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptideQ27734487
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structureQ27860806
Real-time kinetics of HIV-1 Rev-Rev response element interactions. Definition of minimal binding sites on RNA and protein and stoichiometric analysisQ28199340
HIV-1 regulator of virion expression (Rev) protein binds to an RNA stem-loop structure located within the Rev response element regionQ28256243
The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNAQ28279502
Flexible regions of RNA structure facilitate co-operative Rev assembly on the Rev-response elementQ28279514
Sequence homology and morphologic similarity of HTLV-III and visna virus, a pathogenic lentivirusQ28286288
Nucleotide sequence of the visna lentivirus: relationship to the AIDS virusQ28299945
HIV-1 structural gene expression requires the binding of multiple Rev monomers to the viral RRE: implications for HIV-1 latencyQ28646762
HIV-1 structural gene expression requires binding of the Rev trans-activator to its RNA target sequenceQ28646785
Nucleotide sequence and genomic organization of feline immunodeficiency virusQ30011272
Solution oligomerization of the rev protein of HIV-1: implications for function.Q44961250
Retroviruses as model systems for the study of nuclear RNA export pathwaysQ45345414
Characterization of the transcription map and Rev activity of a highly cytopathic feline immunodeficiency virusQ45760215
Definition of the RRE binding and activation domains of the caprine arthritis encephalitis virus Rev proteinQ45766065
Identification of the caprine arthritis encephalitis virus Rev protein and its cis-acting Rev-responsive elementQ45779516
Pathology of viral leukoencephalomyelitis of goatsQ48599300
Sequence-specific RNA binding by the HIV-1 Rev proteinQ50335727
Biochemical characterization of binding of multiple HIV-1 Rev monomeric proteins to the Rev responsive element.Q52389341
HIV-1 Rev expressed in recombinant Escherichia coli: purification, polymerization, and conformational propertiesQ54694214
Themes in RNA-protein recognition.Q30323241
Adaptive recognition in RNA complexes with peptides and protein modulesQ33536621
Intragenic cis-acting art gene-responsive sequences of the human immunodeficiency virusQ33562331
Prediction of common secondary structures of RNAs: a genetic algorithm approachQ33614595
The ins and outs of HIV Rev.Q33635867
Differential requirements for alternative splicing and nuclear export functions of equine infectious anemia virus Rev proteinQ33774771
Purification and characterization of recombinant Rev protein of human immunodeficiency virus type 1.Q33821408
Lentivirus replication and regulationQ33847672
Binding of equine infectious anemia virus rev to an exon splicing enhancer mediates alternative splicing and nuclear export of viral mRNAsQ33963374
Rev protein and its cellular partnersQ34033155
Genome organization and transactivation of the human immunodeficiency virus type 2.Q34048704
Nucleotide sequence analysis of feline immunodeficiency virus: genome organization and relationship to other lentivirusesQ34313909
Functional comparison of the Rev trans-activators encoded by different primate immunodeficiency virus species.Q34314770
Nucleotide sequence analysis of Jembrana disease virus: a bovine lentivirus associated with an acute disease syndromeQ34417825
Oligomerization and RNA binding domains of the type 1 human immunodeficiency virus Rev protein: a dual function for an arginine-rich binding motifQ34588875
A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency virusesQ35833883
Interactions among SR proteins, an exonic splicing enhancer, and a lentivirus Rev protein regulate alternative splicingQ36559372
Protein sequence requirements for function of the human T-cell leukemia virus type 1 Rex nuclear export signal delineated by a novel in vivo randomization-selection assayQ36561338
Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type 1 Rev proteinQ36798430
Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response elementQ37381376
Arginine side-chain dynamics in the HIV-1 rev-RRE complexQ38307170
1H NMR studies of the high-affinity Rev binding site of the Rev responsive element of HIV-1 mRNA: base pairing in the core binding elementQ38308302
Recognition of the high affinity binding site in rev-response element RNA by the Human Immunodeficiency Virus type-1 rev proteinQ38323463
HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA.Q38332496
The complexities of viral genome analysis: the primate lentivirusesQ38503711
Prediction of rho-independent transcriptional terminators in Escherichia coliQ39097710
RNAMotif, an RNA secondary structure definition and search algorithmQ39489150
The genome of feline immunodeficiency virus.Q40725617
Interaction of the human immunodeficiency virus type 1 Rev protein with a structured region in env mRNA is dependent on multimer formation mediated through a basic stretch of amino acidsQ41208182
Specific binding of HIV-1 recombinant Rev protein to the Rev-responsive element in vitroQ41258164
Analysis of trafficking of Rev and transdominant Rev proteins in living cells using green fluorescent protein fusions: transdominant Rev blocks the export of Rev from the nucleus to the cytoplasmQ41271927
Control of transcription termination in prokaryotesQ41291164
Role REVersal: understanding how RRE RNA binds its peptide ligandQ41337016
Nuclear export of proteins and RNAsQ41477073
Sequence requirements for Rev multimerization in vivoQ41662088
Structure-function analyses of the HTLV-I Rex and HIV-1 Rev RNA response elements: insights into the mechanism of Rex and Rev actionQ41733007
Functional analysis of CAR, the target sequence for the Rev protein of HIV-1.Q41757816
Nucleotide sequence and transcriptional analysis of molecular clones of CAEV which generate infectious virusQ42632335
Nucleotide sequence and genome organization of biologically active proviruses of the bovine immunodeficiency-like virusQ42632875
Envelope glycoprotein nucleotide sequence and genetic characterization of North American ovine lentivirusesQ42667935
Binding sites for Rev and ASF/SF2 map to a 55-nucleotide purine-rich exonic element in equine infectious anemia virus RNA.Q43559460
Two secondary structures for the RRE of HIV-1?Q43791596
Characteristics of a novel lentivirus derived from South African sheep with pulmonary adenocarcinoma (jaagsiekte).Q44476567
P433issue6
P304page(s)617-636
P577publication date2002-11-01
P1433published inMedicinal Research ReviewsQ2436033
P1476titleRev response elements (RRE) in lentiviruses: an RNAMotif algorithm-based strategy for RRE prediction
P478volume22

Reverse relations

cites work (P2860)
Q28472824Analysis of the EIAV Rev-responsive element (RRE) reveals a conserved RNA motif required for high affinity Rev binding in both HIV-1 and EIAV
Q33987860Domain- and nucleotide-specific Rev response element regulation of feline immunodeficiency virus production
Q34025960Emergence of a complex relationship between HIV-1 and the microRNA pathway
Q51877979Genome-wide studies reveal that Lin28 enhances the translation of genes important for growth and survival of human embryonic stem cells.
Q39932468Identification of the Rem-responsive element of mouse mammary tumor virus.
Q27477494Searching for IRES
Q33282065Sequence analysis of Jembrana disease virus strains reveals a genetically stable lentivirus
Q42145543The HIV-1 Rev response element: an RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex

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