Identification of potential synthetic lethal genes to p53 using a computational biology approach

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Identification of potential synthetic lethal genes to p53 using a computational biology approach is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1020989289
P356DOI10.1186/1755-8794-6-30
P932PMC publication ID3847148
P698PubMed publication ID24025726
P5875ResearchGate publication ID256500435

P50authorXiaosheng WangQ82275863
P2093author name stringRichard Simon
P2860cites workCentrosome-associated regulators of the G(2)/M checkpoint as targets for cancer therapyQ21245716
DRAKs, novel serine/threonine kinases related to death-associated protein kinase that trigger apoptosisQ22003997
Cyclin-dependent kinase 16/PCTAIRE kinase 1 is activated by cyclin Y and is essential for spermatogenesisQ24300150
Gain of function of mutant p53: the mutant p53/NF-Y protein complex reveals an aberrant transcriptional mechanism of cell cycle regulationQ24301892
A human homolog of the yeast Ssk2/Ssk22 MAP kinase kinase kinases, MTK1, mediates stress-induced activation of the p38 and JNK pathwaysQ24313172
A serine kinase regulates intracellular localization of splicing factors in the cell cycleQ24317050
Differential role of human choline kinase alpha and beta enzymes in lipid metabolism: implications in cancer onset and treatmentQ24317541
Targeting the protein kinase C family: are we there yet?Q52579980
Restoration of the transcription activation function to mutant p53 in human cancer cellsQ71865200
The small-molecule inhibitor BI 2536 reveals novel insights into mitotic roles of polo-like kinase 1Q79754843
Plk4-induced centriole biogenesis in human cellsQ24336451
Mutations in PRKCSH cause isolated autosomal dominant polycystic liver diseaseQ24531988
Mutations in the KRAS2 oncogene during progressive stages of human colon carcinomaQ24619532
Regulation of Akt(ser473) phosphorylation by choline kinase in breast carcinoma cellsQ24646815
A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogeneQ24647664
A panel of isogenic human cancer cells suggests a therapeutic approach for cancers with inactivated p53Q24657532
Targeting the mTOR signaling network for cancer therapyQ24658334
Polo-like kinase (Plk)1 depletion induces apoptosis in cancer cellsQ24675189
Automated screening of microtubule growth dynamics identifies MARK2 as a regulator of leading edge microtubules downstream of Rac1 in migrating cellsQ27332112
Functions of mammalian Cdc7 kinase in initiation/monitoring of DNA replication and developmentQ28187866
Raf kinases in cancer-roles and therapeutic opportunitiesQ28237793
Protein kinase C (PKC) family in cancer progressionQ28252013
Aurora A, meiosis and mitosisQ28265407
The concept of synthetic lethality in the context of anticancer therapyQ28268061
Upstream and downstream of mTORQ28277365
Cdc7 inhibition reveals a p53-dependent replication checkpoint that is defective in cancer cellsQ28286189
Distinct epidermal growth factor receptor and KRAS mutation patterns in non-small cell lung cancer patients with different tobacco exposure and clinicopathologic featuresQ28301684
p53 mutations in human cancersQ28302973
Most human carcinomas of the exocrine pancreas contain mutant c-K-ras genesQ28307762
Polo-like kinases and the orchestration of cell divisionQ29616759
Restoration of p53 function leads to tumour regression in vivoQ29618727
Restoration of wild-type p53 function in human tumors: strategies for efficient cancer therapy.Q30831001
Restoration of the tumor suppressor function to mutant p53 by a low-molecular-weight compound.Q31041084
Gene expression patterns associated with p53 status in breast cancer.Q33265626
Methodological approaches in application of synthetic lethality screening towards anticancer therapyQ33421697
Analysis of gene expression data using BRB-ArrayTools.Q33448521
CellMiner: a relational database and query tool for the NCI-60 cancer cell linesQ33472990
Aurora kinase inhibitors--rising stars in cancer therapeutics?Q33647643
The coordinate regulation of the p53 and mTOR pathways in cellsQ33840457
The human vaccinia-related kinase 1 (VRK1) phosphorylates threonine-18 within the mdm-2 binding site of the p53 tumour suppressor protein.Q33914706
A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assemblyQ33923357
Control of the eukaryotic cell cycle by MAP kinase signaling pathways.Q34071364
Kinetic properties of p53 phosphorylation by the human vaccinia-related kinase 1.Q34117431
Targeting DNA replication before it starts: Cdc7 as a therapeutic target in p53-mutant breast cancersQ34162501
Mindbomb 1, an E3 ubiquitin ligase, forms a complex with RYK to activate Wnt/β-catenin signalingQ34211643
Targeting mTOR signaling for cancer therapyQ34220084
p53-Reactivating small molecules induce apoptosis and enhance chemotherapeutic cytotoxicity in head and neck squamous cell carcinomaQ34547830
p53-dependent apoptosis in response to spindle damage is linked to loss of Bub1.Q34958908
Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancerQ35600870
The functional interactions between the p53 and MAPK signaling pathwaysQ35649728
Surveillance mechanism linking Bub1 loss to the p53 pathwayQ35850149
TP53 mutation status and gene expression profiles are powerful prognostic markers of breast cancerQ35906287
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set.Q36103111
Restoration of wild-type p53 function in human cancer: relevance for tumor therapy.Q36710840
Transcription regulation by mutant p53.Q36777349
A cell-based screen identifies ATR inhibitors with synthetic lethal properties for cancer-associated mutations.Q36908567
TTK/hMps1 mediates the p53-dependent postmitotic checkpoint by phosphorylating p53 at Thr18.Q37192006
Sustained activation of Ras/Raf/mitogen-activated protein kinase cascade by the tumor suppressor p53.Q37222088
Integrated genomic and pharmacological approaches to identify synthetic lethal genes as cancer therapeutic targetsQ37347297
Transcriptional control of the proliferation cluster by the tumor suppressor p53.Q37660051
The p53 response element and transcriptional repressionQ37693593
p53 regulation of the IGF-1/AKT/mTOR pathways and the endosomal compartmentQ37698274
Synthetic lethal interactions for the development of cancer therapeutics: biological and methodological advancementsQ37803147
Mutant human tumor suppressor p53 modulates the activation of mitogen-activated protein kinase and nuclear factor-kappaB, but not c-Jun N-terminal kinase and activated protein-1.Q38319170
A novel Aurora-A-mediated phosphorylation of p53 inhibits its interaction with MDM2.Q39234766
ATM and MET kinases are synthetic lethal with nongenotoxic activation of p53.Q39337933
Targeting the mitotic checkpoint to kill tumor cellsQ39562014
Polo-like kinase-1 as a novel target in neoplastic mast cells: demonstration of growth-inhibitory effects of small interfering RNA and the Polo-like kinase-1 targeting drug BI 2536.Q39606792
Sensitivity of cancer cells to Plk1 inhibitor GSK461364A is associated with loss of p53 function and chromosome instabilityQ39689315
Cdc7-Dbf4 kinase overexpression in multiple cancers and tumor cell lines is correlated with p53 inactivationQ39949011
Choline kinase as a link connecting phospholipid metabolism and cell cycle regulation: implications in cancer therapy.Q40009485
RB silencing compromises the DNA damage-induced G2/M checkpoint and causes deregulated expression of the ECT2 oncogeneQ40252196
Identification of cell cycle regulatory genes as principal targets of p53-mediated transcriptional repressionQ40263007
Mutant p53 induces the GEF-H1 oncogene, a guanine nucleotide exchange factor-H1 for RhoA, resulting in accelerated cell proliferation in tumor cellsQ40266928
The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation.Q40275037
RNA interference-mediated choline kinase suppression in breast cancer cells induces differentiation and reduces proliferationQ40344986
Tumor-derived p53 mutants induce oncogenesis by transactivating growth-promoting genes.Q40568020
Gene transfer of wild-type p53 results in restoration of tumor-suppressor function in a medulloblastoma cell line.Q41317071
Mitotic Kinases and p53 SignalingQ42254103
Knockdown of Chk1, Wee1 and Myt1 by RNA interference abrogates G2 checkpoint and induces apoptosisQ44730805
SAPK pathways and p53 cooperatively regulate PLK4 activity and centrosome integrity under stress.Q51011770
P921main subjectcomputational biologyQ177005
RNA sequencingQ2542347
P304page(s)30
P577publication date2013-09-11
P1433published inBMC Medical GenomicsQ15754662
P1476titleIdentification of potential synthetic lethal genes to p53 using a computational biology approach
P478volume6

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cites work (P2860)
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