| scholarly article | Q13442814 |
| P50 | author | Christophe Fraser | Q41044400 |
| Myron S. Cohen | Q16733099 | ||
| Paul Kellam | Q24005990 | ||
| Túlio de Oliveira | Q30650397 | ||
| Andrew J Leigh Brown | Q55154241 | ||
| Deenan Pillay | Q57899870 | ||
| Joshua Herbeck | Q88691646 | ||
| P2093 | author name string | Ann M Dennis | |
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| HIV-1 nomenclature proposal | Q48750867 | ||
| The WHO public-health approach to antiretroviral treatment against HIV in resource-limited settings. | Q50745207 | ||
| Phylodynamics of HIV-1 subtype F1 in Angola, Brazil and Romania. | Q51385584 | ||
| Epidemiological network analysis in HIV-1 B infected patients diagnosed in Italy between 2000 and 2008. | Q51606809 | ||
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| New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels | Q56880081 | ||
| Subtype Assignment and Phylogenetic Analysis of HIV Type 1 Strains in Patients from Swaziland | Q58279190 | ||
| Phylogenetic Investigation of Transmission Pathways of Drug-Resistant HIV-1 Utilizing Pol Sequences Derived From Resistance Genotyping | Q62022581 | ||
| Molecular epidemiology of acute hepatitis B in the Netherlands in 2004: nationwide survey | Q63880180 | ||
| Transmission networks of HIV-1 among men having sex with men in the Netherlands | Q63914843 | ||
| Natural history of HIV-1 infection | Q73362895 | ||
| Rates of disease progression by baseline CD4 cell count and viral load after initiating triple-drug therapy | Q77230682 | ||
| Toward a robust monitoring of HIV subtypes distribution worldwide | Q83517149 | ||
| HIV-1 drug resistance in antiretroviral-naive patients in sub-Saharan Africa | Q86178001 | ||
| Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom | Q33506612 | ||
| Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections | Q33686402 | ||
| Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial | Q33844706 | ||
| Viral phylodynamics and the search for an 'effective number of infections'. | Q33891619 | ||
| Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups | Q33934355 | ||
| Human immunodeficiency virus. Phylogeny and the origin of HIV-1. | Q33944278 | ||
| A cladistic measure of gene flow inferred from the phylogenies of alleles | Q33955939 | ||
| Inference for nonlinear epidemiological models using genealogies and time series | Q34013571 | ||
| Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe | Q34073190 | ||
| Using HIV transmission networks to investigate community effects in HIV prevention trials | Q34082835 | ||
| Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland | Q34109639 | ||
| Prognosis of HIV-1-infected patients starting highly active antiretroviral therapy: a collaborative analysis of prospective studies | Q34139859 | ||
| Inferring epidemic contact structure from phylogenetic trees | Q34192802 | ||
| Prevalence, genetic diversity and antiretroviral drugs resistance-associated mutations among untreated HIV-1-infected pregnant women in Gabon, central Africa | Q34203562 | ||
| Dynamics of HIV viremia and antibody seroconversion in plasma donors: implications for diagnosis and staging of primary HIV infection | Q34228730 | ||
| Complex population dynamics and the coalescent under neutrality | Q34229245 | ||
| Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection | Q34285912 | ||
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| HIV treatment as prevention: debate and commentary--will early infection compromise treatment-as-prevention strategies? | Q34339450 | ||
| HIV treatment as prevention: systematic comparison of mathematical models of the potential impact of antiretroviral therapy on HIV incidence in South Africa | Q34339465 | ||
| HIV treatment as prevention: modelling the cost of antiretroviral treatment--state of the art and future directions | Q34339471 | ||
| HIV treatment as prevention: issues in economic evaluation | Q34339555 | ||
| Phylodynamics of HIV-1 subtype C epidemic in east Africa | Q34359213 | ||
| Contact heterogeneity and phylodynamics: how contact networks shape parasite evolutionary trees | Q34373076 | ||
| Molecular epidemiology of HIV transmission in a dental practice | Q34419378 | ||
| Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study | Q34539700 | ||
| Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics | Q34574797 | ||
| Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa | Q34606742 | ||
| High coverage of ART associated with decline in risk of HIV acquisition in rural KwaZulu-Natal, South Africa | Q34629087 | ||
| Dramatic increase in HIV prevalence after scale-up of antiretroviral treatment | Q34687399 | ||
| How the dynamics and structure of sexual contact networks shape pathogen phylogenies | Q34789253 | ||
| Rates of emergence of HIV drug resistance in resource-limited settings: a systematic review | Q34969496 | ||
| Phylodynamics of infectious disease epidemics | Q35006016 | ||
| Linkage of viral sequences among HIV-infected village residents in Botswana: estimation of linkage rates in the presence of missing data | Q35084963 | ||
| Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda, by use of next-generation deep sequencing | Q35139723 | ||
| Stabilizing HIV prevalence masks high HIV incidence rates amongst rural and urban women in KwaZulu-Natal, South Africa | Q35165313 | ||
| Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec | Q35188465 | ||
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| Molecular surveillance of HIV-1 in Madrid, Spain: a phylogeographic analysis. | Q35274900 | ||
| Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial | Q35532840 | ||
| Acute HIV revisited: new opportunities for treatment and prevention | Q35730339 | ||
| The role of acute and early HIV infection in the spread of HIV and implications for transmission prevention strategies in Lilongwe, Malawi: a modelling study | Q35742086 | ||
| HIV type 1 in a rural coastal town in Kenya shows multiple introductions with many subtypes and much recombination | Q35746232 | ||
| Timing and source of subtype-C HIV-1 superinfection in the newly infected partner of Zambian couples with disparate viruses | Q35950936 | ||
| Integrating demographic and epidemiological approaches to research on HIV/AIDS: the proximate-determinants framework | Q35997351 | ||
| Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1. | Q36315774 | ||
| Characterizing HIV transmission networks across the United States | Q36486845 | ||
| Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV) | Q36512171 | ||
| Phylogenetic insights into regional HIV transmission | Q36593951 | ||
| Short communication: HIV type 1 transmitted drug resistance and evidence of transmission clusters among recently infected antiretroviral-naive individuals from Ugandan fishing communities of Lake Victoria | Q36795920 | ||
| Modelling tree shape and structure in viral phylodynamics. | Q36918045 | ||
| Positive impact of a large-scale HIV prevention programme among female sex workers and clients in South India | Q36919446 | ||
| Within-host and between-host evolutionary rates across the HIV-1 genome | Q36937390 | ||
| Future of phylogeny in HIV prevention | Q36945699 | ||
| Global trends in antiretroviral resistance in treatment-naive individuals with HIV after rollout of antiretroviral treatment in resource-limited settings: a global collaborative study and meta-regression analysis | Q37216235 | ||
| Localized spatial clustering of HIV infections in a widely disseminated rural South African epidemic | Q37287966 | ||
| Ethical challenges in cluster randomized controlled trials: experiences from public health interventions in Africa and Asia | Q37370806 | ||
| Increases in adult life expectancy in rural South Africa: valuing the scale-up of HIV treatment | Q37386000 | ||
| Clinical presentation and diagnosis of primary HIV-1 infection | Q37447472 | ||
| Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model | Q37680449 | ||
| Treatment as prevention: translating efficacy trial results to population effectiveness | Q37976999 | ||
| Transmission of drug resistant HIV and its potential impact on mortality and treatment outcomes in resource-limited settings | Q38407977 | ||
| Spatial accessibility and the spread of HIV-1 subtypes and recombinants | Q38414002 | ||
| HIV type 1 subtype distribution, multiple infections, sexual networks, and partnership histories in female sex workers in Kampala, Uganda | Q38869824 | ||
| Only a fraction of new HIV infections occur within identifiable stable discordant couples in sub-Saharan Africa | Q38941217 | ||
| Evaluating the proximate determinants framework for HIV infection in rural Zimbabwe. | Q39173772 | ||
| Predicted levels of HIV drug resistance: potential impact of expanding diagnosis, retention, and eligibility criteria for antiretroviral therapy initiation | Q39262699 | ||
| Barking up the wrong evidence tree. Comment on Lurie & Rosenthal, "Concurrent partnerships as a driver of the HIV epidemic in sub-Saharan Africa? The evidence is limited". | Q39270674 | ||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | phylogenetics | Q171184 |
| HIV | Q15787 | ||
| HIV transmission | Q49029021 | ||
| outbreak dynamics | Q95612615 | ||
| P304 | page(s) | 181-195 | |
| P577 | publication date | 2014-10-01 | |
| P1433 | published in | Journal of Acquired Immune Deficiency Syndromes | Q6294722 |
| P1476 | title | Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest? | |
| P478 | volume | 67 |
| Q92587150 | A Short-Term Assessment of Nascent HIV-1 Transmission Clusters Among Newly Diagnosed Individuals Using Envelope Sequence-Based Phylogenetic Analyses |
| Q40065668 | Biased phylodynamic inferences from analysing clusters of viral sequences |
| Q93095420 | Characteristics Associated With Human Immunodeficiency Virus Transmission Networks Involving Adolescent Girls and Young Women in Human Immunodeficiency Virus Prevention Trials Network 068 Study |
| Q38686953 | Clinical and public health implications of acute and early HIV detection and treatment: a scoping review |
| Q39357410 | Concurrency and HIV transmission network characteristics among MSM with recent HIV infection |
| Q91757237 | Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa |
| Q31126087 | Enhanced use of phylogenetic data to inform public health approaches to HIV among men who have sex with men. |
| Q56909994 | Ethical considerations in global HIV phylogenetic research |
| Q90569984 | Ethical issues associated with HIV molecular epidemiology: a qualitative exploratory study using inductive analytic approaches |
| Q89551457 | Evaluation of A Phylogenetic Pipeline to Examine Transmission Networks in A Canadian HIV Cohort |
| Q30387557 | Factors Driving the HIV Epidemic in Southern Africa |
| Q49824500 | Genetic Cluster Analysis for HIV Prevention. |
| Q37000515 | Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland |
| Q57176056 | Growth of HIV-1 Molecular Transmission Clusters in New York City |
| Q40049433 | HIV Transmission Dynamics among Foreign-born Persons in the United States |
| Q40990807 | HIV-1 Transmission During Recent Infection and During Treatment Interruptions as Major Drivers of New Infections in the Swiss HIV Cohort Study |
| Q55717691 | HIV-1 diversity among young women in rural South Africa: HPTN 068. |
| Q62488493 | HIV-1 transmission among persons with acute HIV-1 infection in Malawi: demographic, behavioral and phylogenetic relationships |
| Q41918265 | HIV-1 transmission networks in high risk fishing communities on the shores of Lake Victoria in Uganda: A phylogenetic and epidemiological approach |
| Q50062934 | HIV-TRACE (Transmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens |
| Q35588546 | High Transmissibility During Early HIV Infection Among Men Who Have Sex With Men-San Francisco, California |
| Q38852280 | Identifying Transmission Clusters with Cluster Picker and HIV-TRACE. |
| Q64087283 | Increasing importance of European lineages in seeding the hepatitis C virus subtype 1a epidemic in Spain |
| Q64104205 | Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis |
| Q99585725 | Informed consent for HIV phylogenetic research: A case study of urban individuals living with HIV approached for enrollment in an HIV study |
| Q90254884 | Introduction of Phylodynamics for Controlling the HIV/AIDS Epidemic in Korea |
| Q89236784 | Leveraging Phylogenetics to Understand HIV Transmission and Partner Notification Networks |
| Q38853942 | Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships. |
| Q53018541 | Molecular Epidemiology of HIV-1 Subtype B Reveals Heterogeneous Transmission Risk: Implications for Intervention and Control |
| Q89395082 | Molecular evolution methods to study HIV-1 epidemics |
| Q33722738 | Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup |
| Q28354115 | Phylodynamic and Phylogeographic Profiles of Subtype B HIV-1 Epidemics in South Spain |
| Q66680675 | Phylogenetic Clustering by Linear Integer Programming (PhyCLIP) |
| Q38774793 | Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison. |
| Q40443153 | Phylogenetic insights into age-disparate partnerships and HIV. |
| Q38574468 | Programmatic Implications of Acute and Early HIV Infection |
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