Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice

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Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice is …
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scholarly articleQ13442814

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P819ADS bibcode2013PLoSO...875959O
P356DOI10.1371/JOURNAL.PONE.0075959
P932PMC publication ID3788028
P698PubMed publication ID24098411
P5875ResearchGate publication ID257464834

P50authorJianzhong WuQ52350675
Tsuyoshi TanakaQ55459144
Eri Ogiso-TanakaQ57373372
Kazuki MatsubaraQ79286523
Masahiro YanoQ129259770
P2093author name stringTakashi Matsumoto
Tsuyu Ando
Hiroko Fujisawa
Yasunori Nonoue
Shin-ichi Yamamoto
Harumi Ishikubo
P2860cites workRice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomicsQ36640787
Adaptation of flowering-time by natural and artificial selection in Arabidopsis and riceQ36908187
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated riceQ37110122
Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana.Q37397507
Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1Q37644584
Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variationQ37791759
Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.Q38305146
Diversification in flowering time due to tandem FT-like gene duplication, generating novel Mendelian factors in wild and cultivated rice.Q39041172
A divergent external loop confers antagonistic activity on floral regulators FT and TFL1.Q42177798
An antagonistic pair of FT homologs mediates the control of flowering time in sugar beetQ42787097
DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneouslyQ43010445
The role of casein kinase II in flowering time regulation has diversified during evolutionQ43223346
Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated riceQ44189278
The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in riceQ44550307
Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivationQ44685281
A thermosensory pathway controlling flowering time in Arabidopsis thalianaQ46153974
A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in riceQ47401391
Multiple alleles at Early flowering 1 locus making variation in the basic vegetative growth period in rice (Oryza sativa L.).Q47902875
Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditionsQ48276034
Mathematical model for studying genetic variation in terms of restriction endonucleasesQ24564849
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
14-3-3 proteins act as intracellular receptors for rice Hd3a florigenQ27671307
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutionsQ27860462
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
On the number of segregating sites in genetical models without recombinationQ28206543
FT protein movement contributes to long-distance signaling in floral induction of ArabidopsisQ28298624
Simple methods for testing the molecular evolutionary clock hypothesis.Q29617477
A pair of related genes with antagonistic roles in mediating flowering signals.Q33334148
Hd3a protein is a mobile flowering signal in riceQ33343963
Molecular and functional characterization of PEBP genes in barley reveal the diversification of their roles in floweringQ33346637
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in riceQ33347839
Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grassesQ33564210
A single amino acid converts a repressor to an activator of floweringQ33836294
The role of recently derived FT paralogs in sunflower domesticationQ33969526
Evolution and association analysis of Ghd7 in riceQ34292381
Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences.Q34439307
Genetic control of flowering time in rice, a short-day plantQ34462883
Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length responseQ34467836
Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivarsQ34669752
The wheat and barley vernalization gene VRN3 is an orthologue of FTQ35540090
The TIGR Rice Genome Annotation Resource: improvements and new featuresQ35545826
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of riceQ35779884
PlantGDB: a resource for comparative plant genomicsQ36454314
Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.Q36530504
A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.Q50444584
Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions.Q50514960
Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of rice.Q50716074
Evolution of the PEBP gene family in plants: functional diversification in seed plant evolution.Q51164893
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.Q51578137
Adaptation of photoperiodic control pathways produces short-day flowering in rice.Q52106628
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.Q54534353
Quantitative Modulation of Polycomb Silencing Underlies Natural Variation in VernalizationQ56979102
Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in riceQ78971058
FT genome A and D polymorphisms are associated with the variation of earliness components in hexaploid wheatQ80054144
Accumulation of additive effects generates a strong photoperiod sensitivity in the extremely late-heading rice cultivar 'Nona Bokra'Q80094013
Detection of quantitative trait loci controlling extremely early heading in riceQ80488705
Hd3a and RFT1 are essential for flowering in riceQ80556183
Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivarsQ81826465
Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic floweringQ83594468
Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in riceQ83931921
Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa LQ84534006
LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)Q84956525
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P304page(s)e75959
P577publication date2013-10-01
P1433published inPLOS OneQ564954
P1476titleNatural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice
P478volume8

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Q40814042Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and Heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa).
Q50795879Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
Q92973253Highly multiplexed AmpliSeq technology identifies novel variation of flowering time-related genes in soybean (Glycine max)
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Q33885020Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.
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