Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication.

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Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/ChristensenBLDPT13
P6179Dimensions Publication ID1047844532
P356DOI10.1186/1471-2105-14-325
P932PMC publication ID3840595
P698PubMed publication ID24237905
P5875ResearchGate publication ID258633644

P50authorKris A ChristensenQ86752544
Jenefer DeKoningQ116113059
P2093author name stringGary H Thorgaard
Ruth B Phillips
Joseph P Brunelli
Matthew J Lambert
P2860cites workA comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant speciesQ83388689
The evolution of gene duplicatesQ34586458
A review on SNP and other types of molecular markers and their use in animal geneticsQ34703745
Genomic clues to the evolutionary success of polyploid plantsQ34779924
A conserved haplotype controls parallel adaptation in geographically distant salmonid populationsQ36876883
Whole genome duplication: challenges and considerations associated with sequence orthology assignment in SalmoninaeQ43564977
Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae).Q43757143
Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonidsQ44484574
Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout, Oncorhynchus mykissQ44562854
Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resourcesQ48059167
A general approach to single-nucleotide polymorphism discovery.Q52135125
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing.Q53516841
Two rounds of whole genome duplication in the ancestral vertebrateQ21090230
SNP discovery via 454 transcriptome sequencingQ24680247
A greedy algorithm for aligning DNA sequencesQ29547622
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheatQ30000859
Reliable identification of large numbers of candidate SNPs from public EST dataQ30559720
Computational SNP discovery in DNA sequence data.Q30756891
An SNP map of the human genome generated by reduced representation shotgun sequencingQ30940258
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid speciesQ33259835
Quality assessment parameters for EST-derived SNPs from catfishQ33372933
Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)Q33387044
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlxQ33444290
Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genomeQ33853252
A first generation integrated map of the rainbow trout genomeQ33865269
Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysisQ33953043
Screening the human exome: a comparison of whole genome and whole transcriptome sequencingQ33965942
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversityQ33978952
Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheatQ34031511
A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleostsQ34198235
A transcriptome map of perennial ryegrass (Lolium perenne L.).Q34237599
Primer-BLAST: a tool to design target-specific primers for polymerase chain reactionQ34307627
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjecttranscriptomeQ252857
single-nucleotide polymorphismQ501128
whole genome sequencingQ2068526
whole genome duplicationQ63285481
P304page(s)325
P577publication date2013-11-16
P1433published inBMC BioinformaticsQ4835939
P1476titleIdentification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
P478volume14

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cites work (P2860)
Q41702373A first linkage map and downy mildew resistance QTL discovery for sweet basil (Ocimum basilicum) facilitated by double digestion restriction site associated DNA sequencing (ddRADseq).
Q42320555Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research.
Q36291610Autopolyploidy genome duplication preserves other ancient genome duplications in Atlantic salmon (Salmo salar)
Q34336531Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes
Q47223854De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species
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Q36237381Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage
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