Cis-regulatory elements and epigenetic changes control genomic rearrangements of the IgH locus

scientific article

Cis-regulatory elements and epigenetic changes control genomic rearrangements of the IgH locus is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/S0065-2776(08)00601-9
P932PMC publication ID3115588
P698PubMed publication ID19117530
P5875ResearchGate publication ID23714732

P2093author name stringFrederick W Alt
Thomas Perlot
P2860cites workTranslating the Histone CodeQ22065840
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signalsQ22122053
RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombinationQ27649126
The RAG proteins and V(D)J recombination: complexes, ends, and transpositionQ28145648
Recent advances in understanding chromatin remodeling by Swi/Snf complexesQ28188333
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAiQ28218870
Developmentally controlled and tissue-specific expression of unrearranged VH gene segmentsQ28259020
The lingering enigma of the allelic exclusion mechanismQ28279891
Introduced T cell receptor variable region gene segments recombine in pre-B cells: evidence that B and T cells use a common recombinaseQ28298958
B cell-specific loss of histone 3 lysine 9 methylation in the V(H) locus depends on Pax5Q28505973
Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteinsQ29614507
Genome-wide map of nucleosome acetylation and methylation in yeastQ29614525
The immunoglobulin IGHD gene locus in C57BL/6 miceQ31107178
Shutdown of class switch recombination by deletion of a switch region control element.Q41573717
Helix-loop-helix transcription factor E47 activates germ-line immunoglobulin heavy-chain gene transcription and rearrangement in a pre-T-cell lineQ41672433
The immunoglobulin heavy-chain enhancer functions as the promoter for I mu sterile transcriptionQ41733130
Nucleosome structure completely inhibits in vitro cleavage by the V(D)J recombinaseQ41760941
Association between the Igk and Igh immunoglobulin loci mediated by the 3' Igk enhancer induces 'decontraction' of the Igh locus in pre-B cellsQ41834813
Transcription of productive and nonproductive VDJ-recombined alleles after IgH allelic exclusionQ41944163
Pax5 induces V-to-DJ rearrangements and locus contraction of the immunoglobulin heavy-chain geneQ41945079
Allelic exclusion in transgenic mice carrying mutant human IgM genesQ42071866
B cell development regulated by gene rearrangement: arrest of maturation by membrane-bound D mu protein and selection of DH element reading framesQ42627426
Complete sequence assembly and characterization of the C57BL/6 mouse Ig heavy chain V regionQ42798746
Frequency and characterization of phenotypic Ig heavy chain allelically included IgM-expressing B cells in mice.Q42799157
Family-specific differences in transcription efficiency of Ig heavy chain promotersQ42799347
Dicer ablation affects antibody diversity and cell survival in the B lymphocyte lineageQ42808536
Immunoglobulin heavy-chain expression and class switching in a murine leukaemia cell lineQ43720366
Unexpected requirement for ZAP-70 in pre-B cell development and allelic exclusion.Q44410226
C mu-containing transcripts initiate heterogeneously within the IgH enhancer region and contain a novel 5'-nontranslatable exonQ44747778
Essential roles of the kappa light chain intronic enhancer and 3' enhancer in kappa rearrangement and demethylationQ46053556
Transcriptional repression mediated by repositioning of genes to the nuclear laminaQ46755262
Perinuclear localization of chromatin facilitates transcriptional silencingQ47675987
Antisense intergenic transcription in V(D)J recombinationQ47703435
Somatic hypermutation in the heavy chain locus correlates with transcriptionQ47713194
Deletion of the IgH intronic enhancer and associated matrix-attachment regions decreases, but does not abolish, class switching at the mu locusQ47788471
Regulation of immunoglobulin light chain isotype expressionQ47911157
The mouse IgH 3'-enhancerQ48223460
Preferential utilization of the most JH-proximal VH gene segments in pre-B-cell linesQ48386738
A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genesQ48397666
A tissue-specific transcription enhancer element is located in the major intron of a rearranged immunoglobulin heavy chain geneQ48397674
Identification of D segments of immunoglobulin heavy-chain genes and their rearrangement in T lymphocytes.Q48409957
Two types of somatic recombination are necessary for the generation of complete immunoglobulin heavy-chain genes.Q48412817
An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: VH, D and JH.Q48413837
Deregulated PAX-5 transcription from a translocated IgH promoter in marginal zone lymphoma.Q50755728
Extrachromosomal recombination substrates recapitulate beyond 12/23 restricted VDJ recombination in nonlymphoid cells.Q51840167
Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development.Q52033311
V(D)J recombination in B cells is impaired but not blocked by targeted deletion of the immunoglobulin heavy chain intron enhancerQ40873078
A selective defect in IgG2b switching as a result of targeted mutation of the I gamma 2b promoter and exonQ40873846
Recombination signal sequences restrict chromosomal V(D)J recombination beyond the 12/23 rule.Q40874673
Mutations of the intronic IgH enhancer and its flanking sequences differentially affect accessibility of the JH locus.Q40875075
Visualization of looping involving the immunoglobulin heavy-chain locus in developing B cellsQ40974584
Clonal selection and learning in the antibody systemQ41002744
Cell type-specific chromatin structure determines the targeting of V(D)J recombinase activity in vitroQ41191663
Down-regulation of RAG1 and RAG2 gene expression in PreB cells after functional immunoglobulin heavy chain rearrangementQ41278530
Activation of V kappa gene rearrangement in pre-B cells follows the expression of membrane-bound immunoglobulin heavy chainsQ41352929
A second promoter and enhancer element within the immunoglobulin heavy chain locus.Q41475681
CpG methylated minichromosomes become inaccessible for V(D)J recombination after undergoing replicationQ41514689
Ezh2 controls B cell development through histone H3 methylation and Igh rearrangement.Q52110894
Truncated immunoglobulin Dmu causes incomplete developmental progression of RAG-deficient pro-B cells.Q52126352
Essential functions of Pax5 (BSAP) in pro-B cell development: difference between fetal and adult B lymphopoiesis and reduced V-to-DJ recombination at the IgH locus.Q52196159
Persistent expression of an unproductive immunoglobulin heavy chain allele with DH-JH-gamma configuration in peripheral tissues.Q54551860
Deletion of germline promoter PD beta 1 from the TCR beta locus causes hypermethylation that impairs D beta 1 recombination by multiple mechanisms.Q54584150
A second B cell-specific enhancer 3' of the immunoglobulin heavy-chain locusQ56838225
Rearrangement of IgH genes in normal thymocyte developmentQ56922424
Surrogate Light Chain Expression Is Required to Establish Immunoglobulin Heavy Chain Allelic Exclusion during Early B Cell DevelopmentQ57198364
Targeted disruption of mu chain membrane exon causes loss of heavy-chain allelic exclusionQ59065258
Asynchronous replication and allelic exclusion in the immune systemQ59095417
Novel immunoglobulin heavy chains are produced from DJH gene segment rearrangements in lymphoid cellsQ59098599
A class switch control region at the 3′ end of the immunoglobulin heavy chain locusQ59886033
Translocated c-myc genes produce chimeric transcripts containing antisense sequences of the immunoglobulin heavy chain locus in mouse plasmacytomasQ69028194
The endogenous immunoglobulin heavy chain enhancer can activate tandem VH promoters separated by a large distanceQ69874167
Transcription cell type specificity is conferred by an immunoglobulin VH gene promoter that includes a functional consensus sequenceQ69942457
Activity of multiple light chain genes in murine myeloma cells producing a single, functional light chainQ71514770
Histone acetylation and hSWI/SNF remodeling act in concert to stimulate V(D)J cleavage of nucleosomal DNAQ73270505
The immunoglobulin heavy-chain locus hs3b and hs4 3' enhancers are dispensable for VDJ assembly and somatic hypermutationQ73316142
Deletion of the DQ52 element within the Ig heavy chain locus leads to a selective reduction in VDJ recombination and altered D gene usageQ73401098
Localization of the 3' IgH locus elements that effect long-distance regulation of class switch recombinationQ74419737
Control of V(D)J recombinational accessibility of the D beta 1 gene segment at the TCR beta locus by a germline promoterQ77328514
Essential function for SWI-SNF chromatin-remodeling complexes in the promoter-directed assembly of Tcrb genesQ80521805
Repeat organization and epigenetic regulation of the DH-Cmu domain of the immunoglobulin heavy-chain gene locusQ81096346
Regulation of IgH gene assembly: role of the intronic enhancer and 5'DQ52 region in targeting DHJH recombinationQ82459169
Activation of V(D)J recombination at the IgH chain JH locus occurs within a 6-kilobase chromatin domain and is associated with nucleosomal remodelingQ83170063
Two antisense promoters in the immunoglobulin mu-switch region drive expression of c-myc in the Burkitt's lymphoma cell line BL67.Q33224591
Molecular processes that regulate class switchingQ33758685
Chromatin architecture near a potential 3' end of the igh locus involves modular regulation of histone modifications during B-Cell development and in vivo occupancy at CTCF sitesQ33823918
Sites that direct nuclear compartmentalization are near the 5' end of the mouse immunoglobulin heavy-chain locusQ33884101
The 3' IgH regulatory region: a complex structure in a search for a functionQ33957718
Elucidation of IgH intronic enhancer functions via germ-line deletionQ34063681
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte developmentQ34122320
Regulation of V(D)J recombination: a dominant role for promoter positioning in gene segment accessibilityQ34155960
Factors and forces controlling V(D)J recombinationQ34296487
Multiple DNA sequence elements are necessary for the function of an immunoglobulin heavy chain promoterQ34359857
Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatinQ34450725
Mechanism and control of class-switch recombinationQ34500935
Gene segment selection in V(D)J recombination: accessibility and beyondQ34534913
Accessibility control of V(D)J recombinationQ34570422
Nuclear organisation and gene expressionQ34688480
Changes in histone acetylation are associated with differences in accessibility of V(H) gene segments to V-DJ recombination during B-cell ontogeny and developmentQ34784427
Recombination and transcription of the endogenous Ig heavy chain locus is effected by the Ig heavy chain intronic enhancer core region in the absence of the matrix attachment regionsQ34997657
Position-dependent inhibition of class-switch recombination by PGK-neor cassettes inserted into the immunoglobulin heavy chain constant region locusQ35064395
Kappa chain monoallelic demethylation and the establishment of allelic exclusionQ35202527
Chromatin remodeling directly activates V(D)J recombinationQ35631962
Transcriptional control of early B cell developmentQ35698401
The role of the non-homologous end-joining pathway in lymphocyte developmentQ35830410
Monoallelic gene expression: a repertoire of recurrent themesQ35830431
An enhancer at the 3' end of the mouse immunoglobulin heavy chain locusQ35914587
Antisense intergenic transcription precedes Igh D-to-J recombination and is controlled by the intronic enhancer Emu.Q35950042
Pax5 is required for recombination of transcribed, acetylated, 5' IgH V gene segmentsQ35963602
Immunoglobulin locus silencing and allelic exclusionQ36057588
Regulation of V(D)J recombination by nucleosome positioning at recombination signal sequencesQ36097515
Antigen receptor loci poised for V(D)J rearrangement are broadly associated with BRG1 and flanked by peaks of histone H3 dimethylated at lysine 4Q36161311
The beyond 12/23 restriction is imposed at the nicking and pairing steps of DNA cleavage during V(D)J recombinationQ36177454
Critical roles of the immunoglobulin intronic enhancers in maintaining the sequential rearrangement of IgH and Igk lociQ36228744
Virus-transformed pre-B cells show ordered activation but not inactivation of immunoglobulin gene rearrangement and transcriptionQ36230026
Resolution and characterization of pro-B and pre-pro-B cell stages in normal mouse bone marrowQ36230070
Structure of the 5' ends of immunoglobulin genes: a novel conserved sequenceQ36258756
Expression of a cloned adenovirus gene is inhibited by in vitro methylationQ36281826
Chromosomal position of a VH gene segment determines its activation and inactivation as a substrate for V(D)J recombinationQ36294406
In vitro methylation of the hamster adenine phosphoribosyltransferase gene inhibits its expression in mouse L cellsQ36297565
Biased expression of JH-proximal VH genes occurs in the newly generated repertoire of neonatal and adult miceQ36350730
Developmentally regulated and strain-specific expression of murine VH gene familiesQ36355024
Insertion of phosphoglycerine kinase (PGK)-neo 5' of Jlambda1 dramatically enhances VJlambda1 rearrangementQ36369258
B lineage-specific regulation of V(D)J recombinase activity is established in common lymphoid progenitorsQ36399230
Class switching in B cells lacking 3' immunoglobulin heavy chain enhancers.Q36404262
Mechanism and control of V(D)J recombination at the immunoglobulin heavy chain locusQ36427367
Genetic and epigenetic regulation of IgH gene assemblyQ36449969
Antisense transcripts from immunoglobulin heavy-chain locus V(D)J and switch regionsQ36499177
Ordered rearrangement of immunoglobulin heavy chain variable region segmentsQ36586574
The immunoglobulin heavy chain locus contains another B-cell-specific 3' enhancer close to the alpha constant regionQ36675781
Coordination of immunoglobulin DJH transcription and D-to-JH rearrangement by promoter-enhancer approximationQ36688566
The pre-B-cell receptor.Q36738390
Molecular mechanisms of antibody somatic hypermutation.Q36747477
Structure and expression of germ line immunoglobulin gamma 2b transcriptsQ36787710
Evolution of the immunoglobulin heavy chain class switch recombination mechanismQ36845675
A plant homeodomain in RAG-2 that binds Hypermethylated lysine 4 of histone H3 is necessary for efficient antigen-receptor-gene rearrangementQ37013832
S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminaseQ37164427
V(D)J recombination is not activated by demethylation of the kappa locusQ37229219
Sequence and characterization of the Ig heavy chain constant and partial variable region of the mouse strain 129S1.Q37407401
The 3D structure of the immunoglobulin heavy-chain locus: implications for long-range genomic interactions.Q37407403
Methylation patterns of immunoglobulin genes in lymphoid cells: correlation of expression and differentiation with undermethylationQ37549599
Regulation of interleukin 7-dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5.Q38323522
Cytosine methylation prevents binding to DNA of a HeLa cell transcription factor required for optimal expression of the adenovirus major late promoterQ38346589
Deletion of the Ig kappa light chain intronic enhancer/matrix attachment region impairs but does not abolish V kappa J kappa rearrangementQ38359938
Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavy-chain geneQ38398480
Evidence that immunoglobulin VH-DJ recombination does not require germ line transcription of the recombining variable gene segmentQ39576391
Stepwise activation of the immunoglobulin mu heavy chain gene locusQ39646140
Identification of a candidate regulatory element within the 5' flanking region of the mouse Igh locus defined by pro-B cell-specific hypersensitivity associated with binding of PU.1, Pax5, and E2A.Q40278119
Regulation of TCRbeta gene assembly by a promoter/enhancer holocomplexQ40291803
Targeted inhibition of V(D)J recombination by a histone methyltransferaseQ40585376
Transient IL-7/IL-7R signaling provides a mechanism for feedback inhibition of immunoglobulin heavy chain gene rearrangementsQ40669450
B cell development arrest upon insertion of a neo gene between JH and Emu: promoter competition results in transcriptional silencing of germline JH and complete VDJ rearrangementsQ40684775
The "dispensable" portion of RAG2 is necessary for efficient V-to-DJ rearrangement during B and T cell developmentQ40689893
Nonequivalent nuclear location of immunoglobulin alleles in B lymphocytes.Q40783286
Chromatin remodeling at the Ig loci prior to V(D)J recombinationQ40794209
P407language of work or nameEnglishQ1860
P921main subjectcis-regulatory elementQ1093165
P304page(s)1-32
P577publication date2008-01-01
P1433published inAdvances in ImmunologyQ15752932
P1476titleCis-regulatory elements and epigenetic changes control genomic rearrangements of the IgH locus
P478volume99

Reverse relations

cites work (P2860)
Q420342254C-ing the Igh Landscape
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Q27692655AID targeting is dependent on RNA polymerase II pausing
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Q96430927An Erg-driven transcriptional program controls B cell lymphopoiesis
Q33749938Analysis of mice lacking DNaseI hypersensitive sites at the 5' end of the IgH locus
Q38581000BTK Signaling in B Cell Differentiation and Autoimmunity
Q35090055CTCF-binding elements 1 and 2 in the Igh intergenic control region cooperatively regulate V(D)J recombination
Q42145363CTCF-binding elements mediate control of V(D)J recombination
Q37862986Design principles of adaptive immune systems
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Q34167461Epigenetic regulation of antigen receptor gene rearrangement
Q26772330Epigenetics of Peripheral B-Cell Differentiation and the Antibody Response
Q39606893Flexible long-range loops in the VH gene region of the Igh locus facilitate the generation of a diverse antibody repertoire
Q37417907Genomic Architecture may Influence Recurrent Chromosomal Translocation Frequency in the Igh Locus
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Q93052882Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia
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Q35099409Pre-B cell receptor signaling induces immunoglobulin κ locus accessibility by functional redistribution of enhancer-mediated chromatin interactions
Q37260841Role of the Igh intronic enhancer Eμ in clonal selection at the pre-B to immature B cell transition
Q38438140Seeking sense of antisense switch transcripts.
Q36598995Sequential activation and distinct functions for distal and proximal modules within the IgH 3' regulatory region
Q42734844Targeted chromatin profiling reveals novel enhancers in Ig H and Ig L chain Loci.
Q57191210The Chromatin Reader ZMYND8 Regulates Igh Enhancers to Promote Immunoglobulin Class Switch Recombination
Q37809817The IgH 3' regulatory region and its implication in lymphomagenesis.
Q26852963The Interplay between Chromatin and Transcription Factor Networks during B Cell Development: Who Pulls the Trigger First?
Q43058065The contraction of time and space in remote chromosomal interactions
Q36235676Three-dimensional architecture of the IgH locus facilitates class switch recombination
Q36936186Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus

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