| scholarly article | Q13442814 |
| P50 | author | Konrad Scheffler | Q55121980 |
| Sergei L. Kosakovsky Pond | Q55456380 | ||
| Joel O Wertheim | Q92719379 | ||
| P2093 | author name string | Martin D Smith | |
| Ben Murrell | |||
| P2860 | cites work | Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes | Q21090501 |
| GLADX: an automated approach to analyze the lineage-specific loss and pseudogenization of genes | Q21134529 | ||
| Lineage-specific loss of function of bitter taste receptor genes in humans and nonhuman primates | Q21558767 | ||
| On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE | Q22066047 | ||
| The genomic rate of adaptive evolution | Q22162494 | ||
| Accelerated evolution and Muller's rachet in endosymbiotic bacteria | Q24568178 | ||
| MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
| Endogenous non-retroviral RNA virus elements in mammalian genomes | Q24652160 | ||
| Costs and benefits of a superinfection of facultative symbionts in aphids | Q24676434 | ||
| Codon-substitution models for heterogeneous selection pressure at amino acid sites | Q27473194 | ||
| Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus | Q27485426 | ||
| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 | Q27860476 | ||
| Evolutionary trees from DNA sequences: A maximum likelihood approach | Q27860898 | ||
| The evolutionary fate and consequences of duplicate genes | Q27861065 | ||
| The evolutionary origin of complex features | Q28203090 | ||
| A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome | Q28241386 | ||
| A codon-based model of nucleotide substitution for protein-coding DNA sequences | Q28241397 | ||
| Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes | Q28681321 | ||
| Purifying selection can obscure the ancient age of viral lineages | Q28740712 | ||
| Rhodopsin molecular evolution in mammals inhabiting low light environments | Q28749590 | ||
| Convergent evolution of metabolic roles in bacterial co-symbionts of insects | Q28751668 | ||
| The evolution of color vision in nocturnal mammals | Q28752648 | ||
| Intraspecific variation in symbiont genomes: bottlenecks and the aphid-buchnera association | Q28769051 | ||
| HyPhy: hypothesis testing using phylogenies | Q29013475 | ||
| SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building | Q29547665 | ||
| Datamonkey: rapid detection of selective pressure on individual sites of codon alignments | Q29615126 | ||
| THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE | Q29616118 | ||
| Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology | Q29617583 | ||
| Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene | Q29617599 | ||
| Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages | Q29618516 | ||
| Evolutionary fingerprinting of genes. | Q30382027 | ||
| Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution | Q56384413 | ||
| Why sex and recombination? | Q84878519 | ||
| Adaptation to different human populations by HIV-1 revealed by codon-based analyses | Q33247450 | ||
| Relaxed functional constraints on triplicate α-globin gene in the bank vole suggest a different evolutionary history from other rodents | Q33456337 | ||
| Correcting the bias of empirical frequency parameter estimators in codon models | Q33650881 | ||
| Inferring phylogenies from DNA sequences of unequal base compositions | Q33773055 | ||
| Bacteriophages encode factors required for protection in a symbiotic mutualism | Q33806323 | ||
| Massive losses of taste receptor genes in toothed and baleen whales | Q33836687 | ||
| Bacterial endosymbionts in animals | Q33941531 | ||
| Reduced selective constraint in endosymbionts: elevation in radical amino acid replacements occurs genome-wide | Q34110512 | ||
| Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches | Q34112616 | ||
| Genome evolution in bacterial endosymbionts of insects | Q34157691 | ||
| Extreme genome reduction in symbiotic bacteria | Q34230656 | ||
| Detecting individual sites subject to episodic diversifying selection | Q34341393 | ||
| Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex. | Q34365168 | ||
| A conservative test of genetic drift in the endosymbiotic bacterium Buchnera: slightly deleterious mutations in the chaperonin groEL. | Q34619327 | ||
| The reality and importance of founder speciation in evolution | Q34769266 | ||
| Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors | Q34981697 | ||
| Effects of facultative symbionts and heat stress on the metabolome of pea aphids | Q35012531 | ||
| On the validity of evolutionary models with site-specific parameters | Q35145393 | ||
| Toward a population genetic framework of developmental evolution: the costs, limits, and consequences of phenotypic plasticity | Q35152339 | ||
| Maximum likelihood methods for detecting adaptive evolution after gene duplication. | Q35167155 | ||
| Relaxed selection is a precursor to the evolution of phenotypic plasticity | Q35229245 | ||
| A random effects branch-site model for detecting episodic diversifying selection. | Q35639190 | ||
| The evolutionary genetics of viral emergence | Q36937212 | ||
| Models of coding sequence evolution | Q37089708 | ||
| The visual system in subterranean African mole-rats (Rodentia, Bathyergidae): retina, subcortical visual nuclei and primary visual cortex | Q37106806 | ||
| Investigating protein-coding sequence evolution with probabilistic codon substitution models | Q37298963 | ||
| Relaxed selection in the wild | Q37509533 | ||
| The evolutionary conundrum of pathogen mimicry | Q37608923 | ||
| Evolution of high duty cycle echolocation in bats | Q38033135 | ||
| Relaxed selection and the evolution of RNA virus mucin-like pathogenicity factors | Q42097169 | ||
| Nocturnal light environments influence color vision and signatures of selection on the OPN1SW opsin gene in nocturnal lemurs | Q42693340 | ||
| Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae | Q46958771 | ||
| Color vision of ancestral organisms of higher primates. | Q50528300 | ||
| Sources of variation in dietary requirements in an obligate nutritional symbiosis | Q51624613 | ||
| Transitions to asexuality result in excess amino acid substitutions. | Q51950373 | ||
| Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. | Q52240074 | ||
| Evolution of cytochrome c genes and pseudogenes. | Q52457654 | ||
| P433 | issue | 3 | |
| P921 | main subject | phylogenetics | Q171184 |
| P304 | page(s) | 820-832 | |
| P577 | publication date | 2014-12-23 | |
| P1433 | published in | Molecular Biology and Evolution | Q1992656 |
| P1476 | title | RELAX: detecting relaxed selection in a phylogenetic framework | |
| P478 | volume | 32 |
| Q52595157 | Adaptive evolution during the establishment of European avian-like H1N1 influenza A virus in swine. |
| Q91739794 | An intestinal zinc sensor regulates food intake and developmental growth |
| Q91610799 | Analysis of substitution rates showed that TLR5 is evolving at different rates among mammalian groups |
| Q90759165 | Analyzing the functional divergence of Slo1 and Slo3 channel subfamilies |
| Q89991977 | Ancient co-retention of paralogs of Cid centromeric histones and Cal1 chaperones in mosquito species |
| Q64100890 | Angiosperm-Wide and Family-Level Analyses of / Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication |
| Q49595627 | Arms race of temporal partitioning between carnivorous and herbivorous mammals. |
| Q92447048 | Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype |
| Q37738686 | Causes and consequences of rapidly evolving mtDNA in a plant lineage |
| Q89584460 | Cetacea are natural knockouts for IL20 |
| Q88733537 | Changes in selection intensity on the mitogenome of subterranean and fossorial rodents respective to aboveground species |
| Q58771119 | Characterization of the β-defensin genes in giant panda |
| Q30399388 | Chemosensory adaptations of the mountain fly Drosophila nigrosparsa (Insecta: Diptera) through genomics' and structural biology's lenses. |
| Q94590251 | Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses |
| Q92040059 | Comparative Plastome Analysis of Root- and Stem-Feeding Parasites of Santalales Untangle the Footprints of Feeding Mode and Lifestyle Transitions |
| Q36286644 | Comparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size |
| Q101407448 | Convergent Cortistatin losses parallel modifications in circadian rhythmicity and energy homeostasis in Cetacea and other mammalian lineages |
| Q64272623 | Convergent gene losses illuminate metabolic and physiological changes in herbivores and carnivores |
| Q116816764 | Daphnia japonica sp. nov. (Crustacea: Cladocera) an eastern Palearctic montane species with mitochondrial discordance |
| Q47209606 | Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes |
| Q28551914 | Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus |
| Q36318786 | Discovery and evolution of novel hemerythrin genes in annelid worms |
| Q90698563 | Disentangling the interplay of positive and negative selection forces that shaped mitochondrial genomes of Gammarus pisinnus and Gammarus lacustris |
| Q98943890 | Disrupted architecture and fast evolution of the mitochondrial genome of Argeia pugettensis (Isopoda): implications for speciation and fitness |
| Q28833702 | Do relaxed selection and habitat temperature facilitate biased mitogenomic introgression in a narrowly endemic fish? |
| Q91794142 | Draft genome assembly and transcriptome data of the icefish Chionodraco myersi reveal the key role of mitochondria for a life without hemoglobin at subzero temperatures |
| Q60913054 | Duplication and expression of horizontally transferred polygalacturonase genes is associated with host range expansion of mirid bugs |
| Q64004848 | Emergence of a Chimeric Globin Pseudogene and Increased Hemoglobin Oxygen Affinity Underlie the Evolution of Aquatic Specializations in Sirenia |
| Q90260934 | Evidence for relaxed selection of mitogenome in rapid-flow cyprinids |
| Q47551680 | Evidence of Adaptive Evolution and Relaxed Constraints in Sex-Biased Genes of South American and West Indies Fruit Flies (Diptera: Tephritidae). |
| Q91292177 | Evidence of CPV2c introgression into Croatia and novel insights into phylogeny and cell tropism |
| Q28818385 | Evidence of functional divergence in MSP7 paralogous proteins: a molecular-evolutionary and phylogenetic analysis |
| Q37588907 | Evidence of neofunctionalization after the duplication of the highly conserved Polycomb group gene Caf1-55 in the obscura group of Drosophila |
| Q92404422 | Evolution and functional differentiation of recently diverged phytochelatin synthase genes from Arundo donax L |
| Q64124367 | Evolution and genetic diversity of the gene associated with artemisinin delayed parasite clearance in |
| Q110445220 | Evolution of Geosiris (Iridaceae): historical biogeography and plastid-genome evolution in a genus of non-photosynthetic tropical rainforest herbs disjunct across the Indian Ocean |
| Q101226620 | Evolution of chaperome gene expression and regulatory elements in the antarctic notothenioid fishes |
| Q64089983 | Evolution of digestive enzymes and dietary diversification in birds |
| Q41823352 | Evolutionary coincidence of adaptive changes in exuperantia and the emergence of bicoid in Cyclorrhapha (Diptera) |
| Q64116429 | Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species |
| Q46443607 | Expansion of inverted repeat does not decrease substitution rates in Pelargonium plastid genomes |
| Q92692539 | Expressed Vomeronasal Type-1 Receptors (V1rs) in Bats Uncover Conserved Sequences Underlying Social Chemical Signaling |
| Q57753018 | Functional Evolution of Avian RIG-I-Like Receptors |
| Q97523929 | GBA3: a polymorphic pseudogene in humans that experienced repeated gene loss during mammalian evolution |
| Q110697356 | Gene duplication and rate variation in the evolution of plastid ACCase and Clp genes in angiosperms |
| Q37231257 | Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content |
| Q64062876 | Genetic architecture and sex-specific selection govern modular, male-biased evolution of |
| Q90387786 | Genomic signature of shifts in selection in a sub-alpine ant and its physiological adaptations |
| Q40334315 | Genotype-Specific Evolution of Hepatitis E Virus |
| Q99568928 | Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits |
| Q30275577 | Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation. |
| Q57179241 | Hurdles in the evolutionary epidemiology of : Pseudogenes, incongruence between taxonomy and DNA sequence variants, and cryptic lineages |
| Q36279347 | Inactivation of the olfactory marker protein (OMP) gene in river dolphins and other odontocete cetaceans |
| Q37677947 | Integrative Approaches for Studying Mitochondrial and Nuclear Genome Co-evolution in Oxidative Phosphorylation |
| Q45325188 | Intrapatient viral diversity and treatment outcome in patients with genotype 3a hepatitis C virus infection on sofosbuvir-containing regimens |
| Q116817052 | Leech anticoagulants are ancestral and likely to be multifunctional |
| Q36076829 | Lineage-Specific Reductions of Plastid Genomes in an Orchid Tribe with Partially and Fully Mycoheterotrophic Species. |
| Q64094907 | Local Diversification of Methicillin- Resistant ST239 in South America After Its Rapid Worldwide Dissemination |
| Q35773993 | Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome |
| Q55514423 | Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals. |
| Q58616313 | Loss of enzymes in the bile acid synthesis pathway explains differences in bile composition among mammals |
| Q36083684 | Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants. |
| Q46263884 | Mode and rate of evolution of haemosporidian mitochondrial genomes: timing the radiation of avian parasites |
| Q38981548 | Molecular Evolution of Human Coronavirus Genomes. |
| Q92189406 | Mycoheterotrophic Epirixanthes (Polygalaceae) has a typical angiosperm mitogenome but unorthodox plastid genomes |
| Q47725486 | Natural Selection Drives Rapid Functional Evolution of Young Drosophila Duplicate Genes |
| Q46332750 | On the brink: the highly reduced plastomes of nonphotosynthetic Ericaceae. |
| Q91654719 | Origin and Evolution of Two Independently Duplicated Genes Encoding UDP- Glucose: Glycoprotein Glucosyltransferases in Caenorhabditis and Vertebrates |
| Q55039724 | Oxytocin and arginine vasopressin systems in the domestication process. |
| Q89644378 | Pan-mammalian analysis of molecular constraints underlying extended lifespan |
| Q92212128 | Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids |
| Q48023146 | PhyloChromoMap, a tool for mapping phylogenomic history along chromosomes, reveals the dynamic nature of karyotype evolution in Plasmodium falciparum |
| Q37031869 | Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection |
| Q37090550 | Plastid-Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae |
| Q34491497 | Plastome Evolution in Hemiparasitic Mistletoes |
| Q90337148 | Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae) |
| Q95642529 | Prospects for sociogenomics in avian cooperative breeding and parental care |
| Q39344245 | Purifying selection and genetic drift shaped Pleistocene evolution of the mitochondrial genome in an endangered Australian freshwater fish |
| Q54988057 | Rapid evolution of the Helicobacter pylori AlpA adhesin in a high gastric cancer risk region from Colombia. |
| Q57456954 | Recurrent loss of HMGCS2 shows that ketogenesis is not essential for the evolution of large mammalian brains |
| Q88775148 | Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution |
| Q110951190 | Reproductive isolation among lineages of Silene nutans (Caryophyllaceae): A potential involvement of plastid-nuclear incompatibilities |
| Q41717620 | Rethinking the Origin of Primates by Reconstructing Their Diel Activity Patterns Using Genetics and Morphology |
| Q48247089 | Retinal specialization through spatially varying cell densities and opsin coexpression in cichlid fish. |
| Q47186979 | Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales". |
| Q36372182 | Sexual Dimorphism and Retinal Mosaic Diversification Following the Evolution of a Violet Receptor in Butterflies |
| Q92238756 | Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates |
| Q33613732 | State aggregation for fast likelihood computations in molecular evolution |
| Q46387774 | Superoxide dismutase 1 is positively selected to minimize protein aggregation in great apes |
| Q36273166 | Susceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection. |
| Q94590021 | The cognitive and speech genes are jointly shaped by both positive and relaxed selection in the human lineage |
| Q46270167 | The complete chloroplast genome sequence of the CAM epiphyte Spanish moss (Tillandsia usneoides, Bromeliaceae) and its comparative analysis |
| Q64065540 | The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus |
| Q99587941 | The effect of hybridization on transposable element accumulation in an undomesticated fungal species |
| Q64055350 | The evolution of S100A7: an unusual gene expansion in Myotis bats |
| Q90380825 | The evolution of metabolism: How to test evolutionary hypotheses at the genomic level |
| Q39044490 | The on-again, off-again relationship between mitochondrial genomes and species boundaries |
| Q53417972 | The role of ecological factors in shaping bat cone opsin evolution. |
| Q100526025 | The role of selection in the evolution of marine turtles mitogenomes |
| Q92513687 | Thirteen New Plastid Genomes from Mixotrophic and Autotrophic Species Provide Insights into Heterotrophy Evolution in Neottieae Orchids |
| Q46260201 | Transition to an Aquatic Habitat Permitted the Repeated Loss of the Pleiotropic KLK8 Gene in Mammals. |
| Q91926902 | Trehalase Gene as a Molecular Signature of Dietary Diversification in Mammals |
| Q46426885 | Trpc2 pseudogenization dynamics in bats reveal ancestral vomeronasal signaling, then pervasive loss. |
| Q34534863 | Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae) |
| Q91784820 | Unprecedented Parallel Photosynthetic Losses in a Heterotrophic Orchid Genus |
| Q47887783 | Unusual loss of chymosin in mammalian lineages parallels neo-natal immune transfer strategies |
| Q56659871 | phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics |
Search more.