Network analysis of circular permutations in multidomain proteins reveals functional linkages for uncharacterized proteins

scientific article

Network analysis of circular permutations in multidomain proteins reveals functional linkages for uncharacterized proteins is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.4137/CIN.S14059
P932PMC publication ID4338801
P698PubMed publication ID25741177

P50authorBing-Hua JiangQ63561312
Donald Asogu AdjerohQ103148419
P2093author name stringYue Jiang
Jie Lin
P2860cites workFavin versus concanavalin A: Circularly permuted amino acid sequencesQ21045378
Evolution of Circular Permutations in Multidomain ProteinsQ21045387
Sequence permutations in the molecular evolution of DNA methyltransferasesQ21045389
Circularly permuted proteins in the protein structure databaseQ21045390
Circular Permutations in the Molecular Evolution of DNA MethyltransferasesQ21045391
Rapid motif-based prediction of circular permutations in multi-domain proteinsQ21045410
A simple algorithm for detecting circular permutations in proteinsQ21045413
CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationshipsQ21045415
BRICHOS - a superfamily of multidomain proteins with diverse functionsQ21202152
Cyclin-dependent kinase 3-mediated activating transcription factor 1 phosphorylation enhances cell transformationQ24312766
Cell cycle, CDKs and cancer: a changing paradigmQ24314465
WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagyQ24322858
CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledgeQ24608632
Basic local alignment search toolQ25938991
Tolerance of Protein Folding to a Circular Permutation in a PDZ DomainQ27675273
Crystal structure of a mammalian phosphoinositide-specific phospholipase C deltaQ27732615
A general method applicable to the search for similarities in the amino acid sequence of two proteinsQ27860563
Rck1 and Rck2 MAPKAP kinases and the HOG pathway are required for oxidative stress resistance.Q27934008
Domain combinations in archaeal, eubacterial and eukaryotic proteomesQ28203959
Three-dimensional domain duplication, swapping and stealingQ28242376
Chemistry. Seamless proteins tie up their loose endsQ28302533
Distinct roles for cyclin-dependent kinases in cell cycle controlQ29616480
Flexible secondary structure based protein structure comparison applied to the detection of circular permutation.Q30352923
Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison.Q30356600
Topology independent protein structural alignment.Q30365205
Enhanced graphic matrix analysis of nucleic acid and protein sequencesQ30501600
Enzymology of acyl chain macrocyclization in natural product biosynthesisQ30890213
Loss of proapoptotic Bcl-2-related multidomain proteins in primary melanomas is associated with poor prognosisQ33236007
A cyclic antimicrobial peptide produced in primate leukocytes by the ligation of two truncated alpha-defensinsQ33876954
Retrocyclin: a primate peptide that protects cells from infection by T- and M-tropic strains of HIV-1.Q34011178
Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.Q34408686
The DIMA web resource--exploring the protein domain networkQ34494966
Cellular transformation and activation of the phosphoinositide-3-kinase-Akt cascade by the ETV6-NTRK3 chimeric tyrosine kinase requires c-SrcQ34616022
BCL-2 family antagonists for cancer therapyQ34891196
Fast algorithms for approximate circular string matching.Q35127568
Chemically modified peptides targeting the PDZ domain of GIPC as a therapeutic approach for cancerQ35903324
Bacterial lantibiotics: strategies to improve therapeutic potential.Q36002899
Plant cyclotides disrupt epithelial cells in the midgut of lepidopteran larvaeQ36446131
Circling the enemy: cyclic proteins in plant defenceQ37473960
Structure and genetics of circular bacteriocinsQ37887961
BRICHOS domain associated with lung fibrosis, dementia and cancer--a chaperone that prevents amyloid fibril formation?Q37888775
Discovering the bacterial circular proteins: bacteriocins, cyanobactins, and pilins.Q38018923
Cell cycle regulation by the NEK family of protein kinasesQ38058294
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisonsQ39541659
Somatic mutations of the protein kinase gene family in human lung cancerQ40377902
Critical requirement of BAX for manifestation of apoptosis induced by multiple stimuli in human epithelial cancer cells.Q40724586
Evolutionarily mobile modules in proteins.Q40777868
Circular permutation of polypeptide chains: implications for protein folding and stabilityQ41296871
Circular permutations of natural protein sequences: structural evidenceQ41515840
Coordinate expression of vascular endothelial growth factor receptor-1 (flt-1) and its ligand suggests a paracrine regulation of murine vascular developmentQ42626626
The folding and evolution of multidomain proteinsQ47599342
Folding and misfolding in a naturally occurring circularly permuted PDZ domain.Q50646885
Order independent structural alignment of circularly permuted proteins.Q51924007
Acyclic permutants of naturally occurring cyclic proteins. Characterization of cystine knot and beta-sheet formation in the macrocyclic polypeptide kalata B1.Q52538629
Circular permutants in beta-glucosidases (family 3) within a predicted double-domain topology that includes a (beta/alpha)8-barrelQ57753147
Distribution and evolution of circular miniproteins in flowering plantsQ59161458
Naturally occurring circular permutations in proteinsQ74575672
Circular proteins: ring around with NOESYQ81747220
P433issueSuppl 5
P921main subjectcircular permutation in proteinsQ21045426
P304page(s)109-124
P577publication date2014-01-01
P1433published inCancer InformaticsQ5031410
P1476titleNetwork analysis of circular permutations in multidomain proteins reveals functional linkages for uncharacterized proteins
P478volume13

Search more.