Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

scientific article

Environmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/1755-0998.12261
P698PubMed publication ID24734911
P5875ResearchGate publication ID261675624

P50authorJan PawlowskiQ21503179
Franck LejzerowiczQ59829413
P2093author name stringTomas Cedhagen
Thomas A Wilding
Philippe Esling
P2860cites workCBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdomsQ21145731
The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studiesQ55628106
Genetic differentiation between Arctic and Antarctic monothalamous foraminiferansQ56623166
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoringQ56961653
Extracellular DNA plays a key role in deep-sea ecosystem functioningQ57087921
Impact of oil-based drill mud disposal on benthic foraminiferal assemblages on the continental margin off AngolaQ59140472
Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spillQ21560978
Ancient DNA complements microfossil record in deep-sea subsurface sedimentsQ28690340
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sedimentsQ28741432
Changes in sedimentary redox associated with mussel (Mytilus edulis L.) farms on the west-coast of ScotlandQ30463250
Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanolQ30532034
Can abundance of protists be inferred from sequence data: a case study of foraminiferaQ30592478
A molecular approach to identify active microbes in environmental eukaryote clone librariesQ30829451
Comparison of benthic foraminiferal and macrofaunal responses to organic pollution in the Firth of Clyde (Scotland).Q33308421
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communitiesQ33514749
Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.Q33544840
Comparison of benthic foraminifera and macrofaunal indicators of the impact of oil-based drill mud disposal.Q33687876
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Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthosQ33886933
Next-generation sequencing technologies for environmental DNA researchQ34225587
Towards next-generation biodiversity assessment using DNA metabarcodingQ34225620
Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencingQ34271239
Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebratesQ34544462
Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.Q34669514
Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.Q34670345
Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator speciesQ34898964
Accessing marine protists from the anoxic Cariaco BasinQ35135758
Environmental bio-monitoring with high-throughput sequencing.Q38107188
A review of strategies to monitor water and sediment quality for a sustainability assessment of marine environment.Q38154203
Short rDNA barcodes for species identification in foraminiferaQ38376081
Benthic foraminifera as bio-indicators of trace element pollution in the heavily contaminated Santa Gilla lagoon (Cagliari, Italy).Q46096556
P433issue6
P921main subjectfishQ152
protistQ10892
agricultureQ11451
metabarcodingQ51237016
benthic communityQ123856307
P304page(s)1129-1140
P577publication date2014-05-08
P1433published inMolecular Ecology ResourcesQ15760135
P1476titleEnvironmental monitoring through protist next-generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities
P478volume14

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cites work (P2860)
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