The blossoming of RNA biology: Novel insights from plant systems

scientific article

The blossoming of RNA biology: Novel insights from plant systems is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1261/RNA.303806
P932PMC publication ID1664721
P698PubMed publication ID17053084
P5875ResearchGate publication ID6742912

P2093author name stringCarey L H Hord
Jérôme Bove
Melissa A Mullen
P2860cites workRegulation of phosphate homeostasis by MicroRNA in ArabidopsisQ48106220
Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA.Q48307528
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.Q50728273
The evolution and diversification of Dicers in plants.Q50732527
Characterizations of a hypomorphic argonaute1 mutant reveal novel AGO1 functions in Arabidopsis lateral organ development.Q51725333
Genetic interaction between the AS1-AS2 and RDR6-SGS3-AGO7 pathways for leaf morphogenesis.Q51727447
Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis.Q52087638
FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition.Q52104057
An allelic series reveals essential roles for FY in plant development in addition to flowering-time control.Q53618149
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.Q53624117
Promoter-independent cold-shock induction of cspA and its derepression at 37 degrees C by mRNA stabilization.Q54574151
The Putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development.Q54654781
Dual regulated RNA transport pathways to the cortical region in developing rice endospermQ57839433
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target geneQ63641826
Coi1-dependent expression of an Arabidopsis vegetative storage protein in flowers and siliques and in response to coronatine or methyl jasmonateQ71538650
Hypersensitivity of an Arabidopsis sugar signaling mutant toward exogenous proline applicationQ73907282
Eukaryotic mRNPs may represent posttranscriptional operonsQ74371951
Characterization of a Phosphate-Accumulator Mutant of Arabidopsis thalianaQ74781194
Structural framework for the mechanism of archaeal exosomes in RNA processingQ81476134
Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathwayQ83304554
Multiple processing body factors and the ARE binding protein TTP activate mRNA decappingQ24299303
Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domainsQ24514767
Fast and effective prediction of microRNA/target duplexesQ24537313
Metabolite-binding RNA domains are present in the genes of eukaryotesQ24540199
PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplastsQ24543289
FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of floweringQ24543967
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structureQ24548350
Major cold shock protein of Escherichia coliQ24559918
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in ArabidopsisQ24563174
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in ArabidopsisQ24632891
The microRNAs of Caenorhabditis elegansQ24672515
MicroRNAs in plantsQ24674274
RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.Q24802939
NOPdb: Nucleolar Proteome DatabaseQ25257475
Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domainQ27642533
Structure and conserved RNA binding of the PAZ domainQ27642535
The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexesQ27642580
Combinatorial microRNA target predictionsQ27860510
Argonaute2 is the catalytic engine of mammalian RNAiQ27860545
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targetsQ27860792
RNA-mediated response to heat shock in mammalian cellsQ28118457
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virusQ28138068
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteriaQ28176645
Empirical analysis of transcriptional activity in the Arabidopsis genomeQ28181133
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thalianaQ28201415
The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesisQ28213010
MicroRNAS and their regulatory roles in plantsQ28237934
Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plantsQ28247671
Structure of the S-adenosylmethionine riboswitch regulatory mRNA elementQ28249513
The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factorsQ28257519
A viral suppressor of gene silencing in plantsQ28286683
MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosomeQ28291540
Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthineQ28294025
MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' regionQ28770137
A biochemical framework for RNA silencing in plantsQ28775661
The widespread impact of mammalian MicroRNAs on mRNA repression and evolutionQ29547173
Crystal structure of Argonaute and its implications for RISC slicer activityQ29614980
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arraysQ29615937
The war of the whorls: genetic interactions controlling flower developmentQ29616801
Gene regulation by riboswitchesQ29617439
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower developmentQ29618436
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistanceQ29622908
Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server.Q31035748
Novel and stress-regulated microRNAs and other small RNAs from ArabidopsisQ31095568
The transport of prolamine RNAs to prolamine protein bodies in living rice endosperm cellsQ33193316
Expression of Arabidopsis MIRNA genesQ33220242
Members of the YABBY gene family specify abaxial cell fate in ArabidopsisQ33333938
HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower.Q33336952
HUA ENHANCER2, a putative DExH-box RNA helicase, maintains homeotic B and C gene expression in ArabidopsisQ33337053
Arabidopsis, the Rosetta stone of flowering time?Q33337109
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thalianaQ33338002
Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identityQ33338566
Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genesQ33339334
VARICOSE, a WD-domain protein, is required for leaf blade developmentQ33339458
SERRATE coordinates shoot meristem function and leaf axial patterning in ArabidopsisQ33341688
APETALA2 regulates the stem cell niche in the Arabidopsis shoot meristem.Q33341963
SERRATE is a novel nuclear regulator in primary microRNA processing in ArabidopsisQ33343016
Leaf polarity and meristem formation in ArabidopsisQ33368726
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functionsQ33564752
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolboxQ33981484
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.Q33995683
Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in ArabidopsisQ33995688
RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.Q34003299
Extensive 3' modification of plant small RNAs is modulated by helper component-proteinase expressionQ34016082
Ge-1 is a central component of the mammalian cytoplasmic mRNA processing bodyQ34366701
Elucidation of the small RNA component of the transcriptomeQ34448230
Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligandQ34522067
Negative regulation of the Arabidopsis homeotic gene AGAMOUS by the APETALA2 product.Q34534286
RNA-binding proteins in plants: the tip of an iceberg?Q34787041
Escherichia coli CspA-family RNA chaperones are transcription antiterminatorsQ35167880
Genetic control by metabolite-binding riboswitchesQ35549375
Plant viral suppressors of RNA silencingQ35739917
mRNA localisation gets more complex.Q35774194
Targeting of proteins to endoplasmic reticulum-derived compartments in plants. The importance of RNA localization.Q35948423
The role of mRNA and protein sorting in seed storage protein synthesis, transport, and depositionQ36333364
Flipping riboswitchesQ36535418
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.Q37452372
Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistanceQ37472828
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.Q37494389
AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria.Q37564180
An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in ArabidopsisQ38297398
A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokininQ38305153
RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activatesQ38321463
A cold-regulated nucleic acid-binding protein of winter wheat shares a domain with bacterial cold shock proteinsQ39121796
Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering timeQ39777519
The ABCs of floral homeotic genesQ40624690
Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shootsQ40703601
HUA1 and HUA2 are two members of the floral homeotic AGAMOUS pathwayQ41645130
Methylation as a crucial step in plant microRNA biogenesisQ42119452
DEVELOPMENT OF SYMMETRY IN PLANTS.Q42458314
The role of [Delta]1-pyrroline-5-carboxylate dehydrogenase in proline degradationQ45153601
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterningQ46185049
A miRNA involved in phosphate-starvation response in ArabidopsisQ46219280
Heat stable ssDNA/RNA-binding activity of a wheat cold shock domain proteinQ46657873
Amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpelsQ47689658
FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains.Q48049549
Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunitQ48098374
P433issue12
P407language of work or nameEnglishQ1860
P304page(s)2035-2046
P577publication date2006-10-19
P1433published inRNAQ7277164
P1476titleThe blossoming of RNA biology: Novel insights from plant systems
P478volume12

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cites work (P2860)
Q45912843SLOW WALKER3, Encoding a Putative DEAD‐box RNA Helicase, is Essential for Female Gametogenesis in Arabidopsis
Q36998614Small RNA pathways and diversity in model legumes: lessons from genomics.

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