Transcriptome analysis of shade-induced inhibition on leaf size in relay intercropped soybean

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Transcriptome analysis of shade-induced inhibition on leaf size in relay intercropped soybean is …
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scholarly articleQ13442814

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P819ADS bibcode2014PLoSO...998465G
P356DOI10.1371/JOURNAL.PONE.0098465
P932PMC publication ID4041726
P698PubMed publication ID24886785
P5875ResearchGate publication ID262811665

P2093author name stringXiaobo Yu
Feng Yang
Xin Sun
Xiaochun Wang
Chun Song
Weiguo Liu
Xiaoling Wu
Wenyu Yang
Taiwen Yong
Pengfei Qi
Yushan Wu
Yanhong Yan
Junbo Du
Wanzhuo Gong
P2860cites workMapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Genome sequence of the palaeopolyploid soybeanQ22122200
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationQ24627354
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT MethodQ25938999
Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in PlantsQ27650264
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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptomeQ28743618
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Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybeanQ30978826
Glucosylation activity and complex formation of two classes of reversibly glycosylated polypeptidesQ31056239
Mechanism of leaf-shape determinationQ33241973
Leaf shape: genetic controls and environmental factorsQ33341462
Leaf size control: complex coordination of cell division and expansionQ33353158
Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule developmentQ33503508
Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR.Q33507167
A dynamic analysis of the shade-induced plasticity in Arabidopsis thaliana rosette leaf development reveals new components of the shade-adaptative responseQ33579332
Xyloglucan endotransglycosylases: diversity of genes, enzymes and potential wall-modifying functionsQ33720605
Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevityQ33722381
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica riceQ33791393
Phytochromes and light signal perception by plants--an emerging synthesisQ34061874
Light quality-mediated petiole elongation in Arabidopsis during shade avoidance involves cell wall modification by xyloglucan endotransglucosylase/hydrolases.Q34129942
Shade avoidanceQ34274679
Sequence mining and transcript profiling to explore differentially expressed genes associated with lipid biosynthesis during soybean seed developmentQ34360244
Specific leaf area and dry matter content estimate thickness in laminar leavesQ34450631
RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and -susceptible allelesQ35570215
Keeping up with the neighbours: phytochrome sensing and other signalling mechanisms.Q50518905
Uncoupling light quality from light irradiance effects in Helianthus annuus shoots: putative roles for plant hormones in leaf and internode growth.Q50695376
Leaf functional anatomy in relation to photosynthesis.Q54402789
Shade Tolerance, a Key Plant Feature of Complex Nature and ConsequencesQ56775758
Why are Sun Leaves Thicker than Shade Leaves? — Consideration based on Analyses of CO2 Diffusion in the LeafQ58763644
Acclimation of photosynthesis to high irradiance in rice: gene expression and interactions with leaf developmentQ60323560
Co-Ordination of Cell Division and Tissue Expansion in Sunflower, Tobacco, and Pea Leaves: Dependence or Independence of Both Processes?Q73019194
Cell cycling and cell enlargement in developing leaves of ArabidopsisQ73141903
The effects of elevated CO2 concentration on soybean gene expression. An analysis of growing and mature leavesQ80025783
Mapping cell fate decisions that occur during soybean defense responsesQ85071590
Shade avoidanceQ94701539
Auxin-induced leaf blade expansion in Arabidopsis requires both wounding and detachmentQ35914233
Towards an understanding of photosynthetic acclimation.Q36005486
Phytochromes and shade-avoidance responses in plantsQ36128002
Reaching out of the shade.Q36205416
Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thalianaQ36311891
Biosynthesis of plant cell wall polysaccharides - a complex process.Q36608621
Ecological limits to plant phenotypic plasticityQ36998903
Cellulose synthesis: a complex complexQ37166047
Resistances along the CO2 diffusion pathway inside leavesQ37460492
Control of leaf and vein development by auxinQ37698260
Improving photosynthetic efficiency for greater yieldQ37700583
Cellular responses to auxin: division versus expansionQ37746505
Integration of light and auxin signalingQ37748223
Cellulose synthases and synthesis in ArabidopsisQ37838611
Opinion: prospects for improving photosynthesis by altering leaf anatomyQ38057043
Photoreceptor signaling networks in plant responses to shadeQ38078419
agriGO: a GO analysis toolkit for the agricultural communityQ38373934
Exogenous sucrose utilization and starch biosynthesis among sweet potato cultivarsQ43246763
Shade tolerance: when growing tall is not an option.Q43496544
Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growth.Q43818380
The different growth responses of the Arabidopsis thaliana leaf blade and the petiole during shade avoidance are regulated by photoreceptors and sugar.Q45230509
Overexpression of a cytosol-localized rhamnose biosynthesis protein encoded by Arabidopsis RHM1 gene increases rhamnose content in cell wall.Q45907824
Deciphering and prediction of transcriptome dynamics under fluctuating field conditions.Q46117945
Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA.Q46430398
Irradiance and phenotype: comparative eco-development of sun and shade leaves in relation to photosynthetic CO2 diffusionQ46852990
Leaf expansion in Phaseolus: transient auxin-induced growth increaseQ47105133
Ethylene and auxin control the Arabidopsis response to decreased light intensity.Q47627528
Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of ArabidopsisQ49117207
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesImageJQ1659584
P433issue6
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
companion plantingQ1935508
RNA sequencingQ2542347
P304page(s)e98465
P577publication date2014-06-02
P1433published inPLOS OneQ564954
P1476titleTranscriptome analysis of shade-induced inhibition on leaf size in relay intercropped soybean
P478volume9

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cites work (P2860)
Q90568636Characterization of a splice variant of soybean ERECTA devoid of an intracellular kinase domain in response to shade stress
Q92091131Full-length transcriptome analysis of shade-induced promotion of tuber production in Pinellia ternata
Q92942373Genome-wide identification of GRF transcription factors in soybean and expression analysis of GmGRF family under shade stress
Q37509515Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Q88222451Leaf area and photosynthesis of newly emerged trifoliolate leaves are regulated by mature leaves in soybean
Q99711598Mapping Quantitative Trait Loci for Soybean Seedling Shoot and Root Architecture Traits in an Inter-Specific Genetic Population
Q37637946Metabolomic tool to identify soybean [Glycine max (L.) Merrill] germplasms with a high level of shade tolerance at the seedling stage
Q42369103Photosynthetic Response of Soybean Leaf to Wide Light-Fluctuation in Maize-Soybean Intercropping System
Q41504267Shade Inhibits Leaf Size by Controlling Cell Proliferation and Enlargement in Soybean

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