| scholarly article | Q13442814 |
| P50 | author | Justin C Fay | Q55100198 |
| P2860 | cites work | Recombination and hitchhiking of deleterious alleles | Q43989379 |
| Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics | Q44408152 | ||
| Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size | Q44761567 | ||
| Human SNPs reveal no evidence of frequent positive selection | Q44912985 | ||
| Adaptive evolution of non-coding DNA in Drosophila | Q46601551 | ||
| A selection model of molecular evolution incorporating the effective population size | Q47195795 | ||
| Quantification of adaptive evolution of genes expressed in avian brain and the population size effect on the efficacy of selection | Q47197476 | ||
| The McDonald-Kreitman test and slightly deleterious mutations | Q50064983 | ||
| The rate of adaptive evolution in enteric bacteria | Q50081882 | ||
| Natural selection on synonymous and nonsynonymous mutations shapes patterns of polymorphism in Populus tremula. | Q51647256 | ||
| Evolution and speciation on holey adaptive landscapes. | Q52257646 | ||
| The genomic rate of adaptive amino acid substitution in Drosophila. | Q52646887 | ||
| Estimation of the Neutrality Index | Q52709416 | ||
| Testing a covariotide model of DNA substitution | Q77964185 | ||
| Adaptive evolution of asexual populations under Muller's ratchet | Q80514758 | ||
| Variable epistatic effects between mutations at host recognition sites in phiX174 bacteriophage | Q80542831 | ||
| QTL-based evidence for the role of epistasis in evolution | Q81630370 | ||
| A catalog of neutral and deleterious polymorphism in yeast | Q21563326 | ||
| Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans | Q21563561 | ||
| IS THE POPULATION SIZE OF A SPECIES RELEVANT TO ITS EVOLUTION? | Q22065713 | ||
| Genotype to phenotype: a complex problem | Q22065893 | ||
| Inferring the distribution of mutational effects on fitness in Drosophila | Q22065950 | ||
| Population genomics of domestic and wild yeasts | Q22122208 | ||
| Slightly Deleterious Mutant Substitutions in Evolution | Q22122425 | ||
| The genomic rate of adaptive evolution | Q22162494 | ||
| Preservation of duplicate genes by complementary, degenerative mutations | Q24548042 | ||
| Quantitative prediction of molecular clock and ka/ks at short timescales | Q24600564 | ||
| The evolutionary fate and consequences of duplicate genes | Q27861065 | ||
| Is the population size of a species relevant to its evolution? | Q28215741 | ||
| Toward a selection theory of molecular evolution | Q28270306 | ||
| Comparisons of dN/dS are time dependent for closely related bacterial genomes | Q28278192 | ||
| The neutral theory of molecular evolution in the genomic era | Q28285816 | ||
| Adaptive protein evolution at the Adh locus in Drosophila | Q28302478 | ||
| Pervasive Cryptic Epistasis in Molecular Evolution | Q28475868 | ||
| Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection | Q28748999 | ||
| The origins of genome complexity | Q29547507 | ||
| Darwinian evolution can follow only very few mutational paths to fitter proteins | Q29616042 | ||
| Testing the neutral theory of molecular evolution with genomic data from Drosophila. | Q30677368 | ||
| Assessing the evolutionary impact of amino acid mutations in the human genome | Q33339383 | ||
| Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes | Q33394067 | ||
| Pervasive hitchhiking at coding and regulatory sites in humans | Q33400330 | ||
| Pervasive natural selection in the Drosophila genome? | Q33463271 | ||
| Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup | Q33518903 | ||
| Evidence for pervasive adaptive protein evolution in wild mice | Q33527005 | ||
| Shifts in the intensity of purifying selection: an analysis of genome-wide polymorphism data from two closely related yeast species | Q33684611 | ||
| Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans | Q33828421 | ||
| Correlated evolution of nearby residues in Drosophilid proteins | Q33839433 | ||
| Selection on amino acid substitutions in Arabidopsis | Q33883126 | ||
| Limits of adaptation: the evolution of selective neutrality | Q33951427 | ||
| Genome wide analyses reveal little evidence for adaptive evolution in many plant species. | Q34042396 | ||
| Estimating the parameters of selection on nonsynonymous mutations in Drosophila pseudoobscura and D. miranda | Q34082233 | ||
| Adaptive protein evolution in Drosophila | Q34116884 | ||
| Dobzhansky-Muller incompatibilities in protein evolution | Q34380180 | ||
| The neutral theory in the genomic era. | Q34420764 | ||
| Changes in selective effects over time facilitate turnover of enhancer sequences | Q34537612 | ||
| Patterns of selection on synonymous and nonsynonymous variants in Drosophila miranda | Q34572382 | ||
| Understanding the overdispersed molecular clock | Q34609059 | ||
| Positive and negative selection on the human genome | Q34612936 | ||
| Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle | Q34762116 | ||
| From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation. | Q34949551 | ||
| Selection, recombination and demographic history in Drosophila miranda | Q35221683 | ||
| Sequence Divergence, Functional Constraint, and Selection in Protein Evolution | Q35550628 | ||
| Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution | Q35676702 | ||
| Adaptive genic evolution in the Drosophila genomes | Q35844622 | ||
| Adaptations to fluctuating selection in Drosophila | Q35844678 | ||
| Patterns of molecular variation and evolution in Drosophila americana and its relatives | Q35945729 | ||
| The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations | Q36089115 | ||
| Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome | Q36177388 | ||
| Genomewide spatial correspondence between nonsynonymous divergence and neutral polymorphism reveals extensive adaptation in Drosophila | Q36416190 | ||
| Statistical models of the overdispersed molecular clock | Q37312456 | ||
| Synonymous and nonsynonymous polymorphisms versus divergences in bacterial genomes | Q37324312 | ||
| The contribution of epistasis to the architecture of fitness in an RNA virus | Q37593251 | ||
| The population genomics of plant adaptation. | Q37778860 | ||
| Changing effective population size and the McDonald-Kreitman test | Q41934881 | ||
| Estimating the genomewide rate of adaptive protein evolution in Drosophila | Q42420481 | ||
| Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change | Q42624915 | ||
| Population genetics of polymorphism and divergence under fluctuating selection | Q42963107 | ||
| Controlling type-I error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA. | Q43243955 | ||
| P433 | issue | 9 | |
| P304 | page(s) | 343-349 | |
| P577 | publication date | 2011-07-19 | |
| P1433 | published in | Trends in Genetics | Q2451468 |
| P1476 | title | Weighing the evidence for adaptation at the molecular level | |
| P478 | volume | 27 |
| Q36588998 | A high load of non-neutral amino-acid polymorphisms explains high protein diversity despite moderate effective population size in a marine bivalve with sweepstakes reproduction |
| Q27309280 | Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis |
| Q34312048 | Adaptive evolution: evaluating empirical support for theoretical predictions |
| Q30407123 | Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements |
| Q33811797 | Background selection as baseline for nucleotide variation across the Drosophila genome |
| Q36292526 | Changing preferences: deformation of single position amino acid fitness landscapes and evolution of proteins |
| Q39999890 | Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations. |
| Q100490937 | Demographic history and adaptive synonymous and nonsynonymous variants of nuclear genes in Rhododendron oldhamii (Ericaceae) |
| Q30701255 | Detecting natural selection in genomic data |
| Q44448251 | Detecting positive selection in the genome |
| Q35620493 | Emergent neutrality in adaptive asexual evolution |
| Q36883976 | Frequent adaptation and the McDonald-Kreitman test. |
| Q41924621 | Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts |
| Q34768275 | Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges |
| Q27028044 | Genomic signatures of selection at linked sites: unifying the disparity among species |
| Q30396267 | Intensification: A Resource for Amplifying Population-Genetic Signals with Protein Repeats |
| Q52864185 | Molecular Population Genetics. |
| Q43174337 | Natural Selection in Virulence Genes of Francisella tularensis |
| Q46899490 | Phylogeny of the Centaurea group (Centaurea, Compositae) - geography is a better predictor than morphology |
| Q90320071 | Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius |
| Q45084294 | Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic |
| Q35033425 | The effects of linkage on comparative estimators of selection |
| Q38025117 | The evolution of novelty in conserved gene families |
| Q30650832 | The faster-X effect: integrating theory and data |
| Q93263268 | The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018 |
| Q40737553 | Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome. |
| Q35207816 | Uncovering adaptive evolution in the human lineage. |
| Q22305972 | Weak selection and protein evolution |
| Q36744941 | ZRT1 Harbors an Excess of Nonsynonymous Polymorphism and Shows Evidence of Balancing Selection in Saccharomyces cerevisiae |
| Q38877377 | asymptoticMK: A Web-Based Tool for the Asymptotic McDonald-Kreitman Test |
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