Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach

scientific article

Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JCM.00273-11
P932PMC publication ID3187305
P698PubMed publication ID21813714

P50authorZhiqiang WuQ105681853
P2093author name stringFan Yang
Jian Yang
Ting Zhang
Qi Jin
Jie Dong
Jiang Du
Yongfeng Hu
Jianwei Wang
Lili Ren
Lilian Sun
Zhaohui Xiong
P2860cites workThe marine viromes of four oceanic regionsQ21146032
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Unlocking short read sequencing for metagenomicsQ21562187
Genomic analysis of uncultured marine viral communitiesQ24540367
A human gut microbial gene catalogue established by metagenomic sequencingQ24618931
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
MEGAN analysis of metagenomic dataQ24673516
Sequencing technologies - the next generationQ27860568
A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North AmericaQ28748815
From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencingQ28755522
Functional metagenomic profiling of nine biomesQ30014835
Direct pathogen detection from swab samples using a new high-throughput sequencing technologyQ30388462
High-throughput, sensitive, and accurate multiplex PCR-microsphere flow cytometry system for large-scale comprehensive detection of respiratory virusesQ30444155
Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approachQ33401239
Digital PCR provides sensitive and absolute calibration for high throughput sequencingQ33419711
Statistical methods for detecting differentially abundant features in clinical metagenomic samplesQ33429043
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individualsQ33509530
Human bocaviruses are highly diverse, dispersed, recombination prone, and prevalent in enteric infectionsQ33563104
Microarray-based detection and genotyping of viral pathogensQ34158842
A new arenavirus in a cluster of fatal transplant-associated diseasesQ34747133
Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infectionsQ35913705
Metagenomic diagnosis of bacterial infectionsQ37072335
Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysisQ37157257
The complete genome of klassevirus - a novel picornavirus in pediatric stoolQ43096102
Prevalence of human respiratory viruses in adults with acute respiratory tract infections in Beijing, 2005-2007.Q43175000
Detection of human metapneumovirus and respiratory syncytial virus by duplex real-time RT-PCR assay in comparison with direct fluorescent assayQ45378591
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectbiasQ742736
metagenomicsQ903778
P304page(s)3463-3469
P577publication date2011-08-03
P1433published inJournal of Clinical MicrobiologyQ4041880
P1476titleUnbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach
P478volume49

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cites work (P2860)
Q38829501A metagenomics study for the identification of respiratory viruses in mixed clinical specimens: an application of the iterative mapping approach
Q97533331A metagenomics-based diagnostic approach for central nervous system infections in hospital acute care setting
Q56898183Accuracy of Next Generation Sequencing Platforms
Q89450123Analysis of viral diversity in stool samples from infants and children with acute gastroenteritis in Kuwait using Metagenomics approach
Q39142242Application of next generation sequencing for the detection of human viral pathogens in clinical specimens
Q96163121Application of next generation sequencing technology on contamination monitoring in microbiology laboratory
Q35600172Applications of next-generation sequencing technologies to diagnostic virology
Q40137252Characterization of the nasopharyngeal viral microbiome from children with community-acquired pneumonia but negative for Luminex xTAG respiratory viral panel assay detection
Q30840603Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data
Q30358802Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study.
Q30389641Clinical characterization of influenza A and human respiratory syncytial virus among patients with influenza like illness
Q36922980CloudLCA: finding the lowest common ancestor in metagenome analysis using cloud computing.
Q35794069Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome
Q57039460Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases
Q39954143Complete Genome Sequence of a Salivirus in Respiratory Specimens from a Child with Adenovirus Infection
Q57464738Complex virome in feces from Amerindian children in isolated Amazonian villages
Q34444766Computational tools for viral metagenomics and their application in clinical research
Q36337424Current Advances on Virus Discovery and Diagnostic Role of Viral Metagenomics in Aquatic Organisms
Q24616357Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases
Q36734941Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing
Q57072782Detection of Viral Pathogens With Multiplex Nanopore MinION Sequencing: Be Careful With Cross-Talk
Q34629327Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections
Q92689663Effect of Geographic Isolation on the Nasal Virome of Indigenous Children
Q28078929Environmental Viral Metagenomics Analyses in Aquaculture: Applications in Epidemiology and Disease Control
Q36252852Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing
Q31108731First report of human salivirus/klassevirus in respiratory specimens of a child with fatal adenovirus infection
Q63360759Genome sequencing in clinical microbiology
Q38490268Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines.
Q34366529Going viral: next-generation sequencing applied to phage populations in the human gut.
Q34569184High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology
Q56488800Highlighting Clinical Metagenomics for Enhanced Diagnostic Decision-making: A Step Towards Wider Implementation
Q34746011IMSA: integrated metagenomic sequence analysis for identification of exogenous reads in a host genomic background
Q92188677Identification of a Novel Ichthyic Parvovirus in Marine Species in Hainan Island, China
Q35854627Identification of low abundance microbiome in clinical samples using whole genome sequencing
Q36841941Large-scale sequencing and the natural history of model human RNA viruses
Q47596325Metagenomic analysis of viral diversity in respiratory samples from patients with respiratory tract infections in Kuwait
Q40820980Metagenomic analysis of viral genetic diversity in respiratory samples from children with severe acute respiratory infection in China.
Q57784779Metagenomic analysis of viral nucleic acid extraction methods in respiratory clinical samples
Q34259910Mutations of novel influenza A(H10N8) virus in chicken eggs and MDCK cells
Q37059591Next-generation sequencing diagnostics of bacteremia in septic patients
Q37020538Novel SARS-like betacoronaviruses in bats, China, 2011.
Q46277058Novel hemotropic mycoplasmas are widespread and genetically diverse in vampire bats
Q40090342Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples
Q89932732Optimization of sample preparation for culture-independent sequencing of Bordetella pertussis
Q90176758Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections
Q37368628Pharmacometabolomics Informs Viromics toward Precision Medicine
Q41130282Propidium monoazide (PMA) and ethidium bromide monoazide (EMA) improve DNA array and high-throughput sequencing of porcine reproductive and respiratory syndrome virus identification
Q58101234Quality control implementation for universal characterization of DNA and RNA viruses in clinical respiratory samples using single metagenomic next-generation sequencing workflow
Q30240274Respiratory Syncytial Virus: Infection, Detection, and New Options for Prevention and Treatment
Q53698491Teleosts Genomics: Progress and Prospects in Disease Prevention and Control.
Q57285533The phylogenomics of evolving virus virulence
Q38960916Translational Aspects of the Human Respiratory Virome.
Q30668717Two novel circo-like viruses detected in human feces: complete genome sequencing and electron microscopy analysis
Q36734877Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel
Q91829350Use of Ultra-Deep Sequencing in a Patient with Tuberculous Coxitis Shows Its Limitations in Extrapulmonary Tuberculosis Diagnostics: A Case Report
Q57153277Using non-invasive metagenomics to characterize viral communities from wildlife
Q35850178Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity
Q28727516Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces
Q49979971Virome and bacteriome characterization of children with pneumonia and asthma in Mexico City during winter seasons 2014 and 2015.
Q92883693Viruses in Vietnamese Patients Presenting with Community-Acquired Sepsis of Unknown Cause

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