Selection pressure in alternative reading frames

scientific article

Selection pressure in alternative reading frames is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2014PLoSO...9j8768M
P356DOI10.1371/JOURNAL.PONE.0108768
P932PMC publication ID4182739
P698PubMed publication ID25271416
P5875ResearchGate publication ID266380768

P2093author name stringSteffen Schober
Katharina Mir
P2860cites workA Mathematical Theory of CommunicationQ724029
A dependent-rates model and an MCMC-based methodology for the maximum-likelihood analysis of sequences with overlapping reading frames.Q52064973
Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps.Q53063071
Why genes overlap in viruses.Q55053051
Evolution of Gene Overlaps: Relative Reading Frame Bias in Prokaryotic Two-Component System GenesQ63889333
A maximum-likelihood approach to analyzing nonoverlapping and overlapping reading framesQ72117439
On dynamics of overlapping genes in bacterial genomesQ79349870
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein familiesQ21089567
The population genetics of dN/dSQ21145026
Computing Ka and Ks with a consideration of unequal transitional substitutionsQ21283954
Properties of overlapping genes are conserved across microbial genomesQ22065755
Identifying bacterial genes and endosymbiont DNA with GlimmerQ24653724
Empirical codon substitution matrixQ24815456
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequencesQ27860580
Evolutionary trees from DNA sequences: A maximum likelihood approachQ27860898
Dating of the human-ape splitting by a molecular clock of mitochondrial DNAQ27860908
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary modelsQ28144403
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genomeQ28241386
A codon-based model of nucleotide substitution for protein-coding DNA sequencesQ28241397
Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its applicationQ28268693
Overlapping protein-encoding genes in Pseudomonas fluorescens Pf0-1Q28472902
Purifying and directional selection in overlapping prokaryotic genesQ31068260
A method for the simultaneous estimation of selection intensities in overlapping genesQ33394769
Missing genes in the annotation of prokaryotic genomesQ33540869
IS1414, an Escherichia coli insertion sequence with a heat-stable enterotoxin gene embedded in a transposase-like geneQ33591956
Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniaeQ33856721
Regulation of the overlapping pic/set locus in Shigella flexneri and enteroaggregative Escherichia coliQ34122666
Stability and evolution of overlapping genesQ34510162
BioCode: two biologically compatible Algorithms for embedding data in non-coding and coding regions of DNAQ34660631
Same-strand overlapping genes in bacteria: compositional determinants of phase bias.Q36889689
Simultaneous positive and purifying selection on overlapping reading frames of the tat and vpr genes of simian immunodeficiency virus.Q39606727
Origin and length distribution of unidirectional prokaryotic overlapping genesQ41864017
Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomesQ42657502
Two overlapping antiparallel genes encoding the iron regulator DmdR1 and the Adm proteins control siderophore [correction of sedephore] and antibiotic biosynthesis in Streptomyces coelicolor A3(2).Q43296313
Phenotype of htgA (mbiA), a recently evolved orphan gene of Escherichia coli and Shigella, completely overlapping in antisense to yaaW.Q44672774
Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame productsQ45732078
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P304page(s)e108768
P577publication date2014-10-01
P1433published inPLOS OneQ564954
P1476titleSelection pressure in alternative reading frames
P478volume9

Reverse relations

cites work (P2860)
Q58796498A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences
Q90032387Asymmetric evolution in viral overlapping genes is a source of selective protein adaptation
Q30393522Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic.
Q90428410Frame-shifted proteins of a given gene retain the same function
Q40334315Genotype-Specific Evolution of Hepatitis E Virus
Q55287346The Novel Anaerobiosis-Responsive Overlapping Gene ano Is Overlapping Antisense to the Annotated Gene ECs2385 of Escherichia coli O157:H7 Sakai.
Q47292286Thinking beside the box: Should we care about the non-coding strand of the 16S rRNA gene?

Search more.