MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems is …
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scholarly articleQ13442814

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P819ADS bibcode2014PLoSO...9k0726A
P356DOI10.1371/JOURNAL.PONE.0110726
P932PMC publication ID4201578
P698PubMed publication ID25330359
P5875ResearchGate publication ID267103214

P50authorMarie TouchonQ56458661
Sophie S AbbyQ42321852
Eduardo RochaQ43122750
Hervé MénagerQ48247177
P2093author name stringBertrand Néron
P2860cites workA guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomesQ21090166
BLAST+: architecture and applicationsQ21284368
The genome of M. acetivorans reveals extensive metabolic and physiological diversityQ22065756
The Pfam protein families databaseQ24650035
The use of gene clusters to infer functional couplingQ24673189
Optimal gene partition into operons correlates with gene functional orderQ51932068
ProDom: automated clustering of homologous domainsQ57935149
The origins and evolution of functional modules: lessons from protein complexesQ24673696
CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunityQ27014828
PILER-CR: fast and accurate identification of CRISPR repeatsQ27496514
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeatsQ27496515
Profile hidden Markov modelsQ27860536
Development and applications of CRISPR-Cas9 for genome engineeringQ28241526
The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systemsQ28276177
Accelerated Profile HMM SearchesQ29547576
Evolution and classification of the CRISPR-Cas systemsQ29616645
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and SalmonellaQ33608753
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeatsQ34004457
Gene context conservation of a higher order than operons.Q34069755
TIGRFAMs and Genome Properties in 2013.Q34314590
Multiple pathways process stalled replication forksQ35870700
To acquire or resist: the complex biological effects of CRISPR-Cas systemsQ38192284
TIGRFAMs: a protein family resource for the functional identification of proteinsQ38661957
Predicting protein function by genomic context: quantitative evaluation and qualitative inferencesQ40414366
RNA events. Cas9 targeting and the CRISPR revolutionQ44873775
The Cell as a Collection of Protein Machines: Preparing the Next Generation of Molecular BiologistsQ46148013
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectCRISPRQ412563
P304page(s)e110726
P577publication date2014-10-17
P1433published inPLOS OneQ564954
P1476titleMacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
P478volume9

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cites work (P2860)
Q64056365A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
Q40120673Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens.
Q92883141An archaeal origin of the Wood-Ljungdahl H4MPT branch and the emergence of bacterial methylotrophy
Q34471461Bacteria in Ostreococcus tauri cultures - friends, foes or hitchhikers?
Q55518714CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
Q116673358Campylobacter majalis sp. nov. and Campylobacter suis sp. nov., novel Campylobacter species isolated from porcine gastrointestinal mucosa
Q49444291Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome.
Q97518312Chromosome Architecture and Gene Content of the Emergent Pathogen Acinetobacter haemolyticus
Q40101240Comparative Analysis of the Flavobacterium columnare Genomovar I and II Genomes
Q90162000Comparative Genomic Analysis Confirms Five Genetic Populations of the Select Agent, Rathayibacter toxicus
Q92188576Comparative Genomic Analysis of Citrobacter and Key Genes Essential for the Pathogenicity of Citrobacter koseri
Q33575661Comparative Genomics and Transcriptional Analysis of Flavobacterium columnare Strain ATCC 49512.
Q61449827Comparative Genomics of Secretion Systems and Mutational Analysis of and Genes From T6SS
Q92336005Comparative genome analysis of Lactobacillus mudanjiangensis, an understudied member of the Lactobacillus plantarum group
Q92982540Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally
Q91961945Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens
Q89932736Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087
Q92021283Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
Q91875500Draft Genome Sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated From the Medicinal Plant Pellaea calomelanos
Q92638374Evolution of a family of molecular Rube Goldberg contraptions
Q34557099Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
Q64094445First Report of Integrative Conjugative Elements in Isolates From Ducks in China
Q42026570Genetic and life-history traits associated with the distribution of prophages in bacteria.
Q100737251Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition
Q37128308Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis.
Q57618365Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements
Q39026658Identification of protein secretion systems in bacterial genomes
Q90494569Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations
Q47175590Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
Q64072870Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Q41626922Integrative and conjugative elements and their hosts: composition, distribution and organization
Q64112038Just the Two of Us? A Family of Pseudomonas Megaplasmids Offers a Rare Glimpse into the Evolution of Large Mobile Elements
Q92215815Population gene introgression and high genome plasticity for the zoonotic pathogen Streptococcus agalactiae
Q91971279Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria
Q53085468Testing for Independence between Evolutionary Processes
Q55004831The Genome Sequence of "Candidatus Fokinia solitaria": Insights on Reductive Evolution in Rickettsiales.
Q94561415The Potato Yam Phyllosphere Ectosymbiont Paraburkholderia sp. Msb3 Is a Potent Growth Promotor in Tomato
Q45068073The Type IX Secretion System Is Required for Virulence of the Fish Pathogen Flavobacterium columnare
Q42057713The chromosomal organization of horizontal gene transfer in bacteria
Q64056369The effect of bacterial mutation rate on the evolution of CRISPR-Cas adaptive immunity
Q91753493Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway
Q92128976Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

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