| scholarly article | Q13442814 |
| P2093 | author name string | Wei-Yun Zhu | |
| Sheng-Yong Mao | |||
| Wen-Jie Huo | |||
| P2860 | cites work | Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities | Q24647611 |
| Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities | Q28709077 | ||
| Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats | Q48501546 | ||
| A high-grain diet causes massive disruption of ruminal epithelial tight junctions in goats. | Q50934214 | ||
| Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets. | Q51168314 | ||
| Microbial ecosystem and methanogenesis in ruminants. | Q51627084 | ||
| A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation. | Q51808005 | ||
| Feeding barley grain-rich diets altered electrophysiological properties and permeability of the ruminal wall in a goat model. | Q51831655 | ||
| Microbial butyrate and its role for barrier function in the gastrointestinal tract. | Q52887776 | ||
| A metabolomics approach to uncover the effects of grain diets on rumen health in dairy cows | Q57014304 | ||
| Anaerobic fungi: Neocallimastigomycota | Q28730059 | ||
| Search and clustering orders of magnitude faster than BLAST | Q29547431 | ||
| UniFrac: a new phylogenetic method for comparing microbial communities | Q29547435 | ||
| Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy | Q29547619 | ||
| FastTree: computing large minimum evolution trees with profiles instead of a distance matrix | Q29614577 | ||
| PyNAST: a flexible tool for aligning sequences to a template alignment | Q29616628 | ||
| Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov. | Q30589846 | ||
| Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. | Q30670816 | ||
| pH dynamics and bacterial community composition in the rumen of lactating dairy cows | Q30976544 | ||
| Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). | Q33354792 | ||
| Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis | Q33506939 | ||
| Status of the phylogenetic diversity census of ruminal microbiomes. | Q33790335 | ||
| Community structures of fecal bacteria in cattle from different animal feeding operations | Q33837988 | ||
| Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces | Q34101794 | ||
| Composition and similarity of bovine rumen microbiota across individual animals | Q34202868 | ||
| Structures of free-living and protozoa-associated methanogen communities in the bovine rumen differ according to comparative analysis of 16S rRNA and mcrA genes | Q34249072 | ||
| Comparative survey of rumen microbial communities and metabolites across one caprine and three bovine groups, using bar-coded pyrosequencing and ¹H nuclear magnetic resonance spectroscopy | Q34307046 | ||
| Acidosis in cattle: a review | Q34456285 | ||
| The diversity of the fecal bacterial community and its relationship with the concentration of volatile fatty acids in the feces during subacute rumen acidosis in dairy cows | Q34503072 | ||
| Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota). | Q35129326 | ||
| Early methanogenic colonisation in the faeces of Meishan and Yorkshire piglets as determined by pyrosequencing analysis | Q35134153 | ||
| Invited review: pathology, etiology, prevention, and treatment of fatty liver in dairy cows | Q35891776 | ||
| Adaptation of beef cattle to high-concentrate diets: performance and ruminal metabolism | Q36438377 | ||
| Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook | Q36828427 | ||
| The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle | Q36976412 | ||
| Board-invited review: Recent advances in biohydrogenation of unsaturated fatty acids within the rumen microbial ecosystem | Q37016537 | ||
| Subacute ruminal acidosis in dairy cows: the physiological causes, incidence and consequences | Q37105938 | ||
| Ruminant Nutrition Symposium: Role of fermentation acid absorption in the regulation of ruminal pH. | Q37800771 | ||
| RUMINANT NUTRITION SYMPOSIUM: Molecular adaptation of ruminal epithelia to highly fermentable diets1 | Q37802722 | ||
| Relationship of Rumen Gram-Negative Bacteria and Free Endotoxin to Lactic Acidosis in Cattle | Q39252600 | ||
| Why are ruminal cellulolytic bacteria unable to digest cellulose at low pH? | Q41175878 | ||
| Bovine acidosis: implications on laminitis | Q41493294 | ||
| The hydrogenation of unsaturated fatty acids in the ovine digestive tract | Q42077190 | ||
| The formation and metabolism of phenyl-substituted fatty acids in the ruminant | Q42958900 | ||
| Experimental feed induction of ruminal lactic, propionic, or butyric acidosis in sheep | Q43056304 | ||
| Production of amines in equine cecal contents in an in vitro model of carbohydrate overload | Q44202648 | ||
| Effect of induction of subacute ruminal acidosis on milk fat profile and rumen parameters | Q44732675 | ||
| Alfalfa pellet-induced subacute ruminal acidosis in dairy cows increases bacterial endotoxin in the rumen without causing inflammation | Q46078073 | ||
| Ruminal biosynthesis of aromatic amino acids from arylacetic acids, glucose, shikimic acid and phenol | Q47859871 | ||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | microbiome | Q1330402 |
| P304 | page(s) | 525-541 | |
| P577 | publication date | 2014-12-04 | |
| P1433 | published in | Environmental Microbiology | Q15752447 |
| P1476 | title | Microbiome-metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model | |
| P478 | volume | 18 |
| Q64244086 | A Combined Metabolomic and Proteomic Study Revealed the Difference in Metabolite and Protein Expression Profiles in Ruminal Tissue From Goats Fed Hay or High-Grain Diets |
| Q54963689 | A combination of Lactobacillus mali APS1 and dieting improved the efficacy of obesity treatment via manipulating gut microbiome in mice. |
| Q57492086 | Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future |
| Q90394921 | Altering the Gut Microbiome of Cattle: Considerations of Host-Microbiome Interactions for Persistent Microbiome Manipulation |
| Q42516402 | Antibiotic pretreatment minimizes dietary effects on reconstructure of rumen fluid and mucosal microbiota in goats. |
| Q41716317 | Associations among dietary non-fiber carbohydrate, ruminal microbiota and epithelium G-protein-coupled receptor, and histone deacetylase regulations in goats |
| Q35906964 | Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows |
| Q36273634 | Bacterial community diversity associated with different levels of dietary nutrition in the rumen of sheep |
| Q46300627 | Calling all hosts: Bacterial communication in situ. |
| Q46480467 | Changes in the rumen microbiome and metabolites reveal the effect of host genetics on hybrid crosses |
| Q64256531 | Characteristics of Gut Microbiota in Sows and Their Relationship with Apparent Nutrient Digestibility |
| Q90400945 | Characterization and Comparison of Microbiota in the Gastrointestinal Tracts of the Goat (Capra hircus) During Preweaning Development |
| Q92808380 | Characterization of Anaerobic Rumen Fungal Community Composition in Yak, Tibetan Sheep and Small Tail Han Sheep Grazing on the Qinghai-Tibetan Plateau |
| Q92881006 | Characterization of the Rumen Microbiota and Volatile Fatty Acid Profiles of Weaned Goat Kids under Shrub-Grassland Grazing and Indoor Feeding |
| Q64056642 | Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen |
| Q46051629 | Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period |
| Q61448973 | Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle |
| Q60934808 | Composition of Rumen Bacterial Community in Dairy Cows With Different Levels of Somatic Cell Counts |
| Q47164018 | Computational Approaches for Integrative Analysis of the Metabolome and Microbiome |
| Q39328252 | Diet-induced changes of redox potential underlie compositional shifts in the rumen archaeal community |
| Q37696999 | Dietary grape seed proanthocyanidins (GSPs) improve weaned intestinal microbiota and mucosal barrier using a piglet model |
| Q36390677 | Dimethyl fumarate reduces the risk of mycotoxins via improving intestinal barrier and microbiota |
| Q64915706 | Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type. |
| Q47318772 | Effect of Dietary Forage to Concentrate Ratios on Dynamic Profile Changes and Interactions of Ruminal Microbiota and Metabolites in Holstein Heifers |
| Q94546471 | Effect of stocking density and effective fiber on the ruminal bacterial communities in lactating Holstein cows |
| Q53083127 | Effect of the Associated Methanogen Methanobrevibacter thaueri on the Dynamic Profile of End and Intermediate Metabolites of Anaerobic Fungus Piromyces sp. F1. |
| Q36040020 | Effects of Diets Supplemented with Ensiled Mulberry Leaves and Sun-Dried Mulberry Fruit Pomace on the Ruminal Bacterial and Archaeal Community Composition of Finishing Steers |
| Q60912936 | Effects of Early Intervention with Maternal Fecal Microbiota and Antibiotics on the Gut Microbiota and Metabolite Profiles of Piglets |
| Q89529404 | Effects of High Forage/Concentrate Diet on Volatile Fatty Acid Production and the Microorganisms Involved in VFA Production in Cow Rumen |
| Q47258864 | Effects of limit-feeding diets with different forage-to-concentrate ratios on nutrient intake, rumination, ruminal fermentation, digestibility, blood parameters and growth in Holstein heifers. |
| Q91967679 | Effects of the acid-base treatment of corn on rumen fermentation and microbiota, inflammatory response and growth performance in beef cattle fed high-concentrate diet |
| Q36005151 | Exploring the Goat Rumen Microbiome from Seven Days to Two Years |
| Q60300982 | Exploring the rumen fluid metabolome using liquid chromatography-high-resolution mass spectrometry and Molecular Networking |
| Q37619967 | Feeding a High Concentration Diet Induces Unhealthy Alterations in the Composition and Metabolism of Ruminal Microbiota and Host Response in a Goat Model |
| Q49203690 | Functional Characteristics of the Flying Squirrel's Cecal Microbiota under a Leaf-Based Diet, Based on Multiple Meta-Omic Profiling |
| Q90459535 | Hermetia illucens larvae as a Fishmeal replacement alters intestinal specific bacterial populations and immune homeostasis in weanling piglets |
| Q59809297 | Illumina sequencing analysis of the ruminal microbiota in high-yield and low-yield lactating dairy cows |
| Q36909731 | Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium |
| Q104073546 | Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life |
| Q64241203 | Lactate Degradation Pattern Shifts in Rumen Acidosis Models |
| Q47095588 | Lactation-related metabolic mechanism investigated based on mammary gland metabolomics and 4 biofluids' metabolomics relationships in dairy cows. |
| Q37580767 | Linking Peripartal Dynamics of Ruminal Microbiota to Dietary Changes and Production Parameters. |
| Q36943702 | Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation |
| Q93077566 | Metabolomics reveals potential biomarkers in the rumen fluid of dairy cows with different levels of milk production |
| Q57033257 | Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets |
| Q60921410 | Metagenomic insights into effects of thiamine supplementation on ruminal non-methanogen archaea in high-concentrate diets feeding dairy cows |
| Q92704839 | Microbial community shifts elicit inflammation in the caecal mucosa via the GPR41/43 signalling pathway during subacute ruminal acidosis |
| Q36936453 | Microbiome-Metabolome Responses in the Cecum and Colon of Pig to a High Resistant Starch Diet |
| Q41673146 | Microbiome-Metabolome Responses to a High-Grain Diet Associated with the Hind-Gut Health of Goats |
| Q64982747 | Microbiome-Metabolomics Analysis Investigating the Impacts of Dietary Starch Types on the Composition and Metabolism of Colonic Microbiota in Finishing Pigs. |
| Q37676333 | Moderate dietary protein restriction alters the composition of gut microbiota and improves ileal barrier function in adult pig model |
| Q33804511 | Monensin and Nisin Affect Rumen Fermentation and Microbiota Differently In Vitro. |
| Q52717192 | Morphological adaptation of sheep's rumen epithelium to high-grain diet entails alteration in the expression of genes involved in cell cycle regulation, cell proliferation and apoptosis. |
| Q40593961 | New Primers Targeting Full-Length Ciliate 18S rRNA Genes and Evaluation of Dietary Effect on Rumen Ciliate Diversity in Dairy Cows |
| Q30380226 | Rapid Fermentable Substance Modulates Interactions between Ruminal Commensals and Toll-Like Receptors in Promotion of Immune Tolerance of Goat Rumen. |
| Q90916070 | Response of rumen microbiota, and metabolic profiles of rumen fluid, liver and serum of goats to high-grain diets |
| Q88265263 | Responses in the rumen microbiome of Bos taurus and indicus steers fed a low-quality rice straw diet and supplemented protein |
| Q91818410 | Review: The application of omics to rumen microbiota function |
| Q60049586 | Rumen and plasma metabolomics profiling by UHPLC-QTOF/MS revealed metabolic alterations associated with a high-corn diet in beef steers |
| Q102209022 | Rumen function in goats, an example of adaptive capacity |
| Q64921094 | Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model. |
| Q90290696 | Short-Chain Fatty Acids Regulate the Immune Responses via G Protein-Coupled Receptor 41 in Bovine Rumen Epithelial Cells |
| Q57452716 | Supplementation of a clay mineral-based product modulates plasma metabolomic profile and liver enzymes in cattle fed grain-rich diets |
| Q61810839 | The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease |
| Q50055395 | The application of rumen simulation technique (RUSITEC) for studying dynamics of the bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium perfringens |
| Q92523890 | The microbiome of the digestive system of ruminants - a review |
| Q55003935 | Towards an Integrative Understanding of tRNA Aminoacylation-Diet-Host-Gut Microbiome Interactions in Neurodegeneration. |
| Q60044094 | Treatment of corn with lactic acid or hydrochloric acid modulates the rumen and plasma metabolic profiles as well as inflammatory responses in beef steers |
| Q92816083 | β-Sitosterol Attenuates High Grain Diet-Induced Inflammatory Stress and Modifies Rumen Fermentation and Microbiota in Sheep |
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