Next generation sequencing technologies for insect virus discovery

scientific article

Next generation sequencing technologies for insect virus discovery is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.3390/V3101849
P932PMC publication ID3205385
P698PubMed publication ID22069519
P5875ResearchGate publication ID51785299

P50authorBryony BonningQ52881448
P2093author name stringSijun Liu
Diveena Vijayendran
P2860cites workTemporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and CrithidiaQ21135354
Advanced sequencing technologies and their wider impact in microbiologyQ22065268
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Mechanisms of arthropod transmission of plant and animal virusesQ24548551
RNA interference directs innate immunity against viruses in adult DrosophilaQ24551516
TopHat: discovering splice junctions with RNA-SeqQ24655505
Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project.Q52082672
Characterization of a new densovirus infecting the green peach aphid Myzus persicae.Q52623833
Honey bee disease overview.Q52699964
THE PURIFICATION OF VIRUSLIKE PARTICLES FROM THE APHID MYZUS PERSICAEQ56951736
Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of virusesQ57247207
Some implications of a morphologically oriented classification of virusesQ71619005
Velvet: algorithms for de novo short read assembly using de Bruijn graphsQ24657623
Viral Discovery and Sequence Recovery Using DNA MicroarraysQ24806595
Basic local alignment search toolQ25938991
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoesQ27336298
Viral suppressors of RNA silencing hinder exogenous and endogenous small RNA pathways in DrosophilaQ27348696
West Nile virus infection of Drosophila melanogaster induces a protective RNAi responseQ27486650
Metagenomic Analysis of RNA Viruses in a Fresh Water LakeQ27489640
Accurate Strand-Specific Quantification of Viral RNAQ27490032
Structure of the guide-strand-containing argonaute silencing complexQ27651827
Sequencing technologies - the next generationQ27860568
Next-generation sequencing: from basic research to diagnosticsQ28236571
A metagenomic survey of microbes in honey bee colony collapse disorderQ28247041
The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogasterQ28271770
Viruses in the seaQ28272293
Mechanisms of gene silencing by double-stranded RNAQ28282560
ABySS: a parallel assembler for short read sequence dataQ29547263
Next-generation DNA sequencingQ29547447
Marine viruses--major players in the global ecosystemQ29616822
An integrated semiconductor device enabling non-optical genome sequencingQ29617149
Induction and suppression of RNA silencing by an animal virusQ29618494
Cricket paralysis virus antagonizes Argonaute 2 to modulate antiviral defense in DrosophilaQ30556603
A new virus infecting Myzus persicae has a genome organization similar to the species of the genus Densovirus.Q30762277
Molecular analysis of capsid protein of Homalodisca coagulata Virus-1, a new leafhopper-infecting virus from the glassy-winged sharpshooter, Homalodisca coagulataQ30865650
Discovering new insect viruses: whitefly iridovirus (Homoptera: Aleyrodidae: Bemisia tabaci).Q31055698
Crystal ball. The viriosphere: the greatest biological diversity on Earth and driver of global processesQ31158372
Metagenomic analysis of coastal RNA virus communitiesQ33247702
Expressed sequence tags from the red imported fire ant, Solenopsis invicta: annotation and utilization for discovery of virusesQ33323140
Ars2 regulates both miRNA- and siRNA- dependent silencing and suppresses RNA virus infection in DrosophilaQ33486941
Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs.Q33524701
Data mining cDNAs reveals three new single stranded RNA viruses in Nasonia (Hymenoptera: Pteromalidae).Q33532267
Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencingQ33749767
Bacteriophages encode factors required for protection in a symbiotic mutualismQ33806323
Field guide to next-generation DNA sequencersQ33904607
An insect nidovirus emerging from a primary tropical rainforestQ33932564
Next generation sequencing of microbial transcriptomes: challenges and opportunities.Q34019275
A window into third-generation sequencingQ34139314
RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design.Q34149859
The good viruses: viral mutualistic symbiosesQ34157318
Microarray-based detection and genotyping of viral pathogensQ34158842
Innate immunity and its evasion and suppression by hymenopteran endoparasitoidsQ34194562
Genome sequence and molecular characterization of Homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (Hemiptera: Cicadellidae).Q34507001
RNAi is an antiviral immune response against a dsRNA virus in Drosophila melanogaster.Q34513161
IAPV, a bee-affecting virus associated with Colony Collapse Disorder can be silenced by dsRNA ingestionQ34604190
Next-generation sequencing transforms today's biologyQ34731728
Isolation and characterization of a novel alphanodavirusQ35122239
Insect defenses against virus infection: the role of apoptosisQ35213614
Genome analysis of a Glossina pallidipes salivary gland hypertrophy virus reveals a novel, large, double-stranded circular DNA virusQ36540083
Baculoviruses and apoptosis: a diversity of genes and responsesQ36990045
Overview of DNA sequencing strategiesQ37071720
Densovirus induces winged morphs in asexual clones of the rosy apple aphid, Dysaphis plantagineaQ37208922
Modern uses of electron microscopy for detection of virusesQ37409983
Facultative symbionts in aphids and the horizontal transfer of ecologically important traitsQ37591527
A historical review of managed honey bee populations in Europe and the United States and the factors that may affect themQ37631994
RNA-based antiviral immunityQ37779725
Defense and counterdefense in the RNAi-based antiviral immune system in insectsQ37856839
Application of high-throughput DNA sequencing in phytopathologyQ37872752
Opportunities and challenges for the baculovirus expression systemQ37904377
Discovering novel zoonotic virusesQ39725834
Infectious genomic RNA of Rhopalosiphum padi virus transcribed in vitro from a full-length cDNA cloneQ40002700
Replication of insect iridescent virus 6 in a whitefly cell line.Q40818116
Control of coleopteran insect pests through RNA interferenceQ42031414
Assessment of the application of baculoviruses for control of LepidopteraQ42045305
High diversity of unknown picorna-like viruses in the sea.Q42607122
Sequence analysis and genomic organization of Aphid lethal paralysis virus: a new member of the family DicistroviridaeQ42689685
Immunity and other defenses in pea aphids, Acyrthosiphon pisumQ42776707
Focus on next-generation sequencing data analysis. ForwardQ43853437
Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophilaQ44686815
Citrus tristeza virus infection induces the accumulation of viral small RNAs (21-24-nt) mapping preferentially at the 3'-terminal region of the genomic RNA and affects the host small RNA profileQ45369006
Detection, biological effects, and transmission of a virus of the aphid Rhopalosiphum padiQ45393260
Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genomeQ45660342
Broccoli necrotic yellows virus in cauliflower and in the aphid, Brevicoryne brassicae LQ45888147
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue10
P921main subjectvirusQ808
insectQ1390
eukaryoteQ19088
genomicsQ222046
viral genomeQ22329087
P304page(s)1849-1869
P577publication date2011-10-01
2011-10-10
P1433published inVirusesQ7935305
P1476titleNext generation sequencing technologies for insect virus discovery
P478volume3

Reverse relations

cites work (P2860)
Q40197728A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations.
Q92703588A Novel RNA Virus in the Parasitoid Wasp Lysiphlebus fabarum: Genomic Structure, Prevalence, and Transmission
Q56333189A metatranscriptomic survey of the invasive yellow crazy ant, Anoplolepis gracilipes, identifies several potential viral and bacterial pathogens and mutualists
Q42682635An analysis of 67 RNA-seq datasets from various tissues at different stages of a model insect, Manduca sexta
Q28818379Aphis Glycines Virus 2, a Novel Insect Virus with a Unique Genome Structure
Q31166044Bacterial community survey of Solenopsis invicta Buren (red imported fire ant) colonies in the presence and absence of Solenopsis invicta virus (SINV).
Q42223213Characterization of complete genome and small RNA profile of pagoda yellow mosaic associated virus, a novel badnavirus in China.
Q49830216Characterization of viral RNA splicing using whole-transcriptome datasets from host species
Q35817748Characterizing novel endogenous retroviruses from genetic variation inferred from short sequence reads
Q36350954Complete study demonstrating the absence of rhabdovirus in a distinct Sf9 cell line
Q59126817Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection
Q40097275Covert Infection of Insects by Baculoviruses
Q58566016Detection of novel and recognized RNA viruses in mosquitoes from the Yucatan Peninsula of Mexico using metagenomics and characterization of their in vitro host ranges
Q28596222Discovery of parvovirus-related sequences in an unexpected broad range of animals
Q26700142Diverse Array of New Viral Sequences Identified in Worldwide Populations of the Asian Citrus Psyllid (Diaphorina citri) Using Viral Metagenomics
Q26852131Emerging strategies for RNA interference (RNAi) applications in insects
Q35034904Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq
Q36360995Exploratory analysis of Symbiodinium transcriptomes reveals potential latent infection by large dsDNA viruses
Q39332330Extended phylogenetic analysis of a new Israeli isolate of Brevicoryne brassicae virus (BrBV-IL) suggests taxonomic revision of the genus Iflavirus
Q90072276First Report of Aleurocanthus spiniferus on Ailanthus altissima: Profiling of the Insect Microbiome and MicroRNAs
Q36007235Functional Immunomics of the Squash Bug, Anasa tristis (De Geer) (Heteroptera: Coreidae).
Q31144771Genome sequence, prevalence and quantification of the first iflavirus identified in a phytoplasma insect vector.
Q37566705Historical perspective, development and applications of next-generation sequencing in plant virology
Q36663415Iflavirus increases its infectivity and physical stability in association with baculovirus
Q27012980Immunology in wild nonmodel rodents: an ecological context for studies of health and disease
Q28652613In search of pathogens: transcriptome-based identification of viral sequences from the pine processionary moth (Thaumetopoea pityocampa)
Q38994123Invertebrate RNA virus diversity from a taxonomic point of view
Q47805464New Method for Differentiation of Granuloviruses (Betabaculoviruses) Based on Multitemperature Single Stranded Conformational Polymorphism.
Q34791437Next generation sequencing of viral RNA genomes
Q28661551Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts
Q44169678Novel viruses in salivary glands of mosquitoes from sylvatic Cerrado, Midwestern Brazil.
Q40225697Protocols for Investigating the Host-tissue Distribution, Transmission-mode, and Effect on the Host Fitness of a Densovirus in the Cotton Bollworm
Q92096178Sensitivity and specificity of metatranscriptomics as an arbovirus surveillance tool
Q54245873Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
Q43957826Small RNA populations for two unrelated viruses exhibit different biases in strand polarity and proximity to terminal sequences in the insect host Homalodisca vitripennis
Q28688660Smallest organism; highest threat
Q64100653The First Complete Genome Sequence of a Novel RNA Virus-1 (TbRV-1)
Q34098330The Lymantria dispar IPLB-Ld652Y cell line transcriptome comprises diverse virus-associated transcripts
Q28647100The discovery, distribution, and evolution of viruses associated with drosophila melanogaster
Q28596150The evolution, diversity, and host associations of rhabdoviruses
Q37279664The possible impact of persistent virus infection on the function of the RNAi machinery in insects: a hypothesis
Q35224856Transcriptome analysis of Bombyx mori larval midgut during persistent and pathogenic cytoplasmic polyhedrosis virus infection
Q33794601Viral Delivery of dsRNA for Control of Insect Agricultural Pests and Vectors of Human Disease: Prospects and Challenges
Q30363485Viral metagenomics on animals as a tool for the detection of zoonoses prior to human infection?
Q34816628Virus discovery and recent insights into virus diversity in arthropods

Search more.