Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum

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Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1186/S12864-015-1491-7
P8608Fatcat IDrelease_oxxsjaj7yngojhynim5mbnuleu
P932PMC publication ID4403905
P698PubMed publication ID25887420
P5875ResearchGate publication ID275365577

P50authorBlaž ZupanQ95841036
Gad ShaulskyQ37384804
P2093author name stringBalaji Santhanam
William F Loomis
Mariko Katoh-Kurasawa
Danny Fuller
Rafael David Rosengarten
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
The genome of the social amoeba Dictyostelium discoideumQ22122479
Self-recognition in social amoebae is mediated by allelic pairs of tiger genesQ24630015
Polymorphic members of the lag gene family mediate kin discrimination in DictyosteliumQ24648334
Cell signaling during development of DictyosteliumQ26823849
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Functional discovery via a compendium of expression profilesQ27938962
Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer.Q30407380
Bleb-driven chemotaxis of Dictyostelium cellsQ30576937
A gentle guide to the analysis of metabolomic dataQ31065948
The possible role of ammonia in phototaxis of migrating slugs of Dictyostelium discoideumQ33577863
Mitochondrial reactive oxygen species promote epidermal differentiation and hair follicle developmentQ33596134
baySeq: empirical Bayesian methods for identifying differential expression in sequence count dataQ33653650
Conserved developmental transcriptomes in evolutionarily divergent species.Q33829795
Ammonia and thermotaxis: Further evidence for a central role of ammonia in the directed cell mass movements of Dictyostelium discoideumQ33850448
Oxidative stress and gene regulationQ33853144
The mitochondrial DNA of Dictyostelium discoideum: complete sequence, gene content and genome organizationQ33902626
Outside-in signaling of cellulose synthesis by a spore coat protein in DictyosteliumQ33904868
Expression patterns of cell-type-specific genes in Dictyostelium.Q33946660
Chapter 6 Cell Aggregation and Differentiation in DictyosteliumQ67240983
Signals controlling cell differentiation and pattern formation in DictyosteliumQ69851707
Cultivation of Dictyostelium discoideum in axenic mediumQ72339800
The signals for starvation response are transduced through elevated [Ca2+]i in Dictyostelium cellsQ74577878
The MADS-box transcription factor SrfA is required for actin cytoskeleton organization and spore coat stability during Dictyostelium sporulationQ75223857
Evidence for the formation of cell aggregates by chemotaxis in the development of the slime mold Dictyostelium discoideumQ83277145
Pvclust: an R package for assessing the uncertainty in hierarchical clustering.Q51630850
What is principal component analysis?Q51891406
Live imaging of the Dictyostelium cell cycle reveals widespread S phase during development, a G2 bias in spore differentiation and a premitotic checkpoint.Q51961137
A novel developmental mechanism in Dictyostelium revealed in a screen for communication mutants.Q52102725
The Dictyostelium discoideum prespore-specific catalase B functions to control late development and to protect spore viability.Q52104549
Regulated expression of the MADS-box transcription factor SrfA mediates activation of gene expression by protein kinase A during Dictyostelium sporulation.Q52115408
A transcriptional profile of multicellular development in Dictyostelium discoideum.Q52122009
Severe developmental defects in Dictyostelium null mutants for actin-binding proteins.Q52170379
A possible morphogen controlling differentiation in Dictyostelium.Q52281263
Superoxide signalling required for multicellular development of Dictyostelium.Q52608897
Effects of ethidium bromide on various segments of the respiratory chain in the cellular slime mold, Dictyostelium discoideum.Q54748143
Cultivation and synchronous morphogenesis of Dictyostelium under controlled experimental conditions.Q54769657
Epistasis analysis with global transcriptional phenotypesQ57681849
Tissue-specific G1-phase cell-cycle arrest prior to terminal differentiation in DictyosteliumQ57835254
Signals from mature to new leavesQ58071153
Ammonia determines the choice of morphogenetic pathways in Dictyostelium discoideumQ67014174
Unconventional secretion of AcbA in Dictyostelium discoideum through a vesicular intermediateQ33983193
Pulsatile signaling in intercellular communication. Periodic stimuli are more efficient than random or chaotic signals in a model based on receptor desensitizationQ34088302
Prespore cell fate bias in G1 phase of the cell cycle in Dictyostelium discoideumQ34097644
Mitochondrial DNA replication but no nuclear DNA replication during development of DictyosteliumQ34246315
Transcriptional regulation of post-aggregation genes in Dictyostelium by a feed-forward loop involving GBF and LagC.Q34480804
Transcriptional profiling of Dictyostelium with RNA sequencingQ34620817
Cytokinins induce sporulation in Dictyostelium.Q34740132
ABC transporters in Dictyostelium discoideum developmentQ34962395
Genetic evidence that the acyl coenzyme A binding protein AcbA and the serine protease/ABC transporter TagA function together in Dictyostelium discoideum cell differentiationQ35216716
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureumQ35286224
Genome-wide expression analyses of gene regulation during early development of Dictyostelium discoideumQ35612733
The Dictyostelium ribosome: biochemistry, molecular biology, and developmental regulationQ35656999
Primary structure and regulation of vegetative specific genes of Dictyostelium discoideumQ35959435
Differential synthesis of spore coat proteins in prespore and prestalk cells of DictyosteliumQ36323748
Transcriptional regulation of Dictyostelium pattern formationQ36526851
Alternative Developmental Pathways Determined by Environmental Conditions in the Cellular Slime Mold Dictyostelium discoideumQ36819542
A molecular network that produces spontaneous oscillations in excitable cells of DictyosteliumQ36935264
Function of reactive oxygen species during animal development: passive or active?Q37191663
Positive genetic feedback governs cAMP spiral wave formation in DictyosteliumQ37519181
Developmental changes in transcriptional profilesQ37859093
Signaling mechanisms for chemotaxisQ37876440
Control of prestalk-cell differentiation by transcription factorsQ37876445
Cyclic AMP waves during aggregation of Dictyostelium amoebae.Q38311692
Steroids initiate a signaling cascade that triggers rapid sporulation in DictyosteliumQ38357023
A new Dictyostelium prestalk cell sub-typeQ39805765
Control of cell differentiation by mitochondria, typically evidenced in dictyostelium developmentQ39871805
Production and activity of spore differentiation factors (SDFs) in Dictyostelium.Q41009396
Growth of myxamoebae of the cellular slime mould Dictyostelium discoideum in axenic cultureQ41826297
Mitochondrial metabolism as a regulator of keratinocyte differentiationQ41871345
The metabolism of macromolecules during the differentiation of myxamoebae of the cellular slime mould Dictyostelium discoideum containing different amounts of glycogenQ42143379
The GPI-anchored superoxide dismutase SodC is essential for regulating basal Ras activity and for chemotaxis of Dictyostelium discoideumQ42441204
Role of phosphatidylinositol 3' kinase and a downstream pleckstrin homology domain-containing protein in controlling chemotaxis in dictyosteliumQ42836631
The involvement of the plasma membrane in the development of Dictyostelium discoideum. I. Purification of the plasma membrane.Q45987003
GABA induces terminal differentiation of Dictyostelium through a GABAB receptor.Q46345963
NADPH oxidase homologs are required for normal cell differentiation and morphogenesis in Dictyostelium discoideumQ46541212
Spore coat protein synthesis during development of Dictyostelium discoideum requires a low-molecular-weight inducer and continued multicellularityQ47230343
Starvation promotes Dictyostelium development by relieving PufA inhibition of PKA translation through the YakA kinase pathway.Q47954964
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesscikit-learnQ1026367
P407language of work or nameEnglishQ1860
P921main subjectDictyostelium discoideumQ134351
transcriptomeQ252857
RNA sequencingQ2542347
P304page(s)294
P577publication date2015-04-13
P1433published inBMC GenomicsQ15765854
P1476titleLeaps and lulls in the developmental transcriptome of Dictyostelium discoideum
P478volume16

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