| scholarly article | Q13442814 |
| P50 | author | Dave Thirumalai | Q88596136 |
| P2093 | author name string | John E Straub | |
| Govardhan Reddy | |||
| P2860 | cites work | Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires | Q24628864 |
| Atomic-Level Characterization of the Ensemble of the Aβ(1–42) Monomer in Water Using Unbiased Molecular Dynamics Simulations and Spectral Algorithms | Q24633954 | ||
| Amyloid-beta protein dimers isolated directly from Alzheimer's brains impair synaptic plasticity and memory | Q24645499 | ||
| The Alzheimer's peptides Abeta40 and 42 adopt distinct conformations in water: a combined MD / NMR study | Q24683781 | ||
| Atomic structures of amyloid cross-beta spines reveal varied steric zippers | Q27644644 | ||
| Molecular structural basis for polymorphism in Alzheimer's -amyloid fibrils | Q27652925 | ||
| Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils | Q28388148 | ||
| Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Abeta peptides with implications for rates of fibril formation | Q28388665 | ||
| Dominant forces in protein folding | Q29616390 | ||
| Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils | Q29617476 | ||
| Effect of beta-sheet propensity on peptide aggregation | Q30157299 | ||
| Direct observation of nucleation and growth in amyloid self-assembly | Q30388150 | ||
| Molecular dynamics simulations of Alzheimer's beta-amyloid protofilaments | Q31010167 | ||
| Amyloid fibers are water-filled nanotubes | Q31048768 | ||
| Atomistic simulations of the effects of polyglutamine chain length and solvent quality on conformational equilibria and spontaneous homodimerization | Q33761386 | ||
| Principles governing oligomer formation in amyloidogenic peptides | Q33787635 | ||
| Functional amyloids as natural storage of peptide hormones in pituitary secretory granules | Q33834886 | ||
| Nucleated conformational conversion and the replication of conformational information by a prion determinant | Q33915141 | ||
| Net charge per residue modulates conformational ensembles of intrinsically disordered proteins | Q33929602 | ||
| Exploring the propensities of helices in PrP(C) to form beta sheet using NMR structures and sequence alignments | Q34178599 | ||
| Structural insights into a yeast prion illuminate nucleation and strain diversity | Q34425023 | ||
| Emerging ideas on the molecular basis of protein and peptide aggregation | Q35119718 | ||
| Monomer adds to preformed structured oligomers of Abeta-peptides by a two-stage dock-lock mechanism. | Q35578410 | ||
| Unraveling infectious structures, strain variants and species barriers for the yeast prion [PSI+]. | Q35852028 | ||
| Exploring protein aggregation and self-propagation using lattice models: phase diagram and kinetics | Q36639277 | ||
| Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability | Q36976633 | ||
| Probing the mechanisms of fibril formation using lattice models | Q37165313 | ||
| Dynamics of locking of peptides onto growing amyloid fibrils | Q37274330 | ||
| What determines the structure and stability of KFFE monomers, dimers, and protofibrils? | Q37277489 | ||
| 2D IR provides evidence for mobile water molecules in beta-amyloid fibrils | Q37394372 | ||
| Probing the instabilities in the dynamics of helical fragments from mouse PrPC. | Q37593382 | ||
| Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides | Q37603743 | ||
| Toward a molecular theory of early and late events in monomer to amyloid fibril formation | Q37827116 | ||
| The structural basis of yeast prion strain variants | Q41792123 | ||
| Role of water in mediating the assembly of Alzheimer amyloid-beta Abeta16-22 protofilaments | Q41825234 | ||
| Characterization of the nucleation barriers for protein aggregation and amyloid formation | Q41950121 | ||
| Effect of dehydration on the aggregation kinetics of two amyloid peptides | Q41985249 | ||
| Determining the critical nucleus and mechanism of fibril elongation of the Alzheimer's Abeta(1-40) peptide. | Q42059881 | ||
| Pathway complexity of prion protein assembly into amyloid | Q43931352 | ||
| Polymerization-depolymerization of tobacco mosaic virus protein | Q43980268 | ||
| POLYMERIZATION-DEPOLYMERIZATION OF TOBACCO MOSAIC VIRUS PROTEIN. IV. THE ROLE OF WATER. | Q45713404 | ||
| Polymerization-depolymerization of tobacco mosaic virus protein. XII. Further studies on the role of water | Q45809887 | ||
| Role of backbone-solvent interactions in determining conformational equilibria of intrinsically disordered proteins | Q46594558 | ||
| Atomic-level description of amyloid beta-dimer formation | Q47603835 | ||
| Energy landscape theory for Alzheimer's amyloid beta-peptide fibril elongation. | Q53344184 | ||
| Hydrophobic and ionic interactions in nanosized water droplets. | Q53587041 | ||
| Dissecting the assembly of Abeta16-22 amyloid peptides into antiparallel beta sheets. | Q53658048 | ||
| Enhancement of Protein Crystal Nucleation by Critical Density Fluctuations | Q56932074 | ||
| Beyond the prion principle | Q57083618 | ||
| Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers | Q57132790 | ||
| Abeta40-Lactam(D23/K28) models a conformation highly favorable for nucleation of amyloid | Q57187810 | ||
| Insights into the amyloid folding problem from solid-state NMR | Q57188281 | ||
| Factors Governing Fibrillogenesis of Polypeptide Chains Revealed by Lattice Models | Q58429565 | ||
| Interpreting the aggregation kinetics of amyloid peptides | Q79782434 | ||
| Amyloid fibril polymorphism is under kinetic control | Q85159320 | ||
| P433 | issue | 1 | |
| P921 | main subject | protein aggregation | Q7251455 |
| P304 | page(s) | 83-92 | |
| P577 | publication date | 2011-07-15 | |
| P1433 | published in | Accounts of Chemical Research | Q899474 |
| P1476 | title | Role of water in protein aggregation and amyloid polymorphism | |
| P478 | volume | 45 |
| Q41941638 | A large solvent isotope effect on protein association thermodynamics |
| Q36851059 | A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy. |
| Q41874211 | A simple lattice model that captures protein folding, aggregation and amyloid formation |
| Q45798878 | A water wire in L-prolyl-L-serine monohydrate |
| Q34423823 | Amyloid fibrillation of insulin under water-limited conditions |
| Q39004129 | Amyloid misfolding, aggregation, and the early onset of protein deposition diseases: insights from AFM experiments and computational analyses |
| Q36043816 | An Analysis of Biomolecular Force Fields for Simulations of Polyglutamine in Solution |
| Q57126846 | Anisotropy in the dielectric spectrum of hydration water and its relation to water dynamics |
| Q34503099 | Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association |
| Q47442457 | Binding of fullerenes to amyloid beta fibrils: size matters |
| Q34949156 | Binding, conformational transition and dimerization of amyloid-β peptide on GM1-containing ternary membrane: insights from molecular dynamics simulation |
| Q36176612 | Biomolecular Crowding Arising from Small Molecules, Molecular Constraints, Surface Packing, and Nano-Confinement |
| Q44064170 | Characterization of the internal dynamics and conformational space of zinc-bound amyloid β peptides by replica-exchange molecular dynamics simulations |
| Q51017813 | Characterizing Structural Stability of Amyloid Motif Fibrils Mediated by Water Molecules. |
| Q33941543 | Coarse-grained model for colloidal protein interactions, B(22), and protein cluster formation |
| Q50796594 | Combined effects of solvation and aggregation propensity on the final supramolecular structures adopted by hydrophobic, glycine-rich, elastin-like polypeptides. |
| Q48215047 | Confined Water in Amyloid-Competent Oligomers of the Prion Protein. |
| Q48446186 | Conformational features of the Aβ42 peptide monomer and its interaction with the surrounding solvent |
| Q46323407 | Critical Influence of Cosolutes and Surfaces on the Assembly of Serpin-Derived Amyloid Fibrils. |
| Q56985374 | Cu/Zn-superoxide dismutase forms fibrillar hydrogels in a pH-dependent manner via a water-rich extended intermediate state |
| Q39208405 | Determination of Relative Counterion Binding Constant to Cationic Micelles |
| Q90446544 | Development of Convenient System for Detecting Yeast Cell Stress, Including That of Amyloid Beta |
| Q40433616 | Dielectric response of the water hydration layer around spherical solutes. |
| Q48043997 | Dimerization and conformation-related free energy landscapes of dye-tagged amyloid-β12-28 linked to FRET experiments |
| Q34084687 | Disordered amyloidogenic peptides may insert into the membrane and assemble into common cyclic structural motifs |
| Q50149258 | Dissociation of β-Sheet Stacking of Amyloid β Fibrils by Irradiation of Intense, Short-Pulsed Mid-infrared Laser. |
| Q41700480 | Distinct Protein Hydration Water Species Defined by Spatially Resolved Spectra of Intermolecular Vibrations |
| Q38256782 | Dynamic droplets: the role of cytoplasmic inclusions in stress, function, and disease |
| Q34440267 | Effect of mid-infrared free-electron laser irradiation on refolding of amyloid-like fibrils of lysozyme into native form |
| Q47299318 | Effects of force fields on the conformational and dynamic properties of amyloid β(1-40) dimer explored by replica exchange molecular dynamics simulations |
| Q54264348 | Electrostatics controls the formation of amyloid superstructures in protein aggregation. |
| Q30450982 | Elongation kinetics of polyglutamine peptide fibrils: a quartz crystal microbalance with dissipation study |
| Q35234396 | Evaluation of Nanoparticle Tracking for Characterization of Fibrillar Protein Aggregates |
| Q34642775 | Exploring the role of hydration and confinement in the aggregation of amyloidogenic peptides Aβ(16-22) and Sup35(7-13) in AOT reverse micelles |
| Q64124342 | Femtosecond Hydration Map of Intrinsically Disordered α-Synuclein |
| Q40219120 | Fmoc-RGDS based fibrils: atomistic details of their hierarchical assembly. |
| Q38661710 | Frutapin, a lectin from Artocarpus incisa (breadfruit): cloning, expression and molecular insights. |
| Q64251597 | Fused in Sarcoma: Properties, Self-Assembly and Correlation with Neurodegenerative Diseases |
| Q49958934 | Heparan sulfates facilitate harmless amyloidogenic fibril formation interacting with elastin-like peptides |
| Q46599058 | How Does Hyperphopsphorylation Promote Tau Aggregation and Modulate Filament Structure and Stability? |
| Q91709619 | How accurate are your simulations? Effects of confined aqueous volume and AMBER FF99SB and CHARMM22/CMAP force field parameters on structural ensembles of intrinsically disordered proteins: Amyloid-β42 in water |
| Q30940142 | Hydration water mobility is enhanced around tau amyloid fibers |
| Q46512456 | Hydrodynamic effects on β-amyloid (16-22) peptide aggregation |
| Q64258107 | Hyperosmotic stress induces cell-dependent aggregation of α-synuclein |
| Q91266367 | In Silico Evidence That Protein Unfolding is a Precursor of Protein Aggregation |
| Q58063457 | Influence of metal salts on the hydrogelation properties of ultrashort aliphatic peptides |
| Q47974258 | Inhibition of GNNQQNY prion peptide aggregation by trehalose: a mechanistic view. |
| Q57840236 | Inhibitory effect of hydrophobic fullerenes on the β-sheet-rich oligomers of a hydrophilic GNNQQNY peptide revealed by atomistic simulations |
| Q36874806 | Initiation of assembly of tau(273-284) and its ΔK280 mutant: an experimental and computational study. |
| Q53192170 | Interplay between the hydrophobic effect and dipole interactions in peptide aggregation at interfaces. |
| Q37113863 | Intrinsic structural heterogeneity and long-term maturation of amyloid β peptide fibrils |
| Q41607902 | Mechanism of crystalline self-assembly in aqueous medium: a combined cryo-TEM/kinetic study |
| Q47676752 | Mobility-based prediction of hydration structures of protein surfaces |
| Q38238202 | Molecular understanding of a potential functional link between antimicrobial and amyloid peptides |
| Q34887269 | Nanoimaging for Molecular Pharmaceutics of Alzheimer's and other Neurodegenerative Disorders |
| Q64071268 | Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions |
| Q47658556 | Non-conformal coarse-grained potentials for water |
| Q55311585 | On the molecular origin of the cooperative coil-to-globule transition of poly(N-isopropylacrylamide) in water. |
| Q92372738 | Pharmacophoric Site Identification and Inhibitor Design for Autotaxin |
| Q51805155 | Polymorphic cross-seeding amyloid assemblies of amyloid-β and human islet amyloid polypeptide. |
| Q46460031 | Probing oligomerization of amyloid beta peptide in silico |
| Q38237445 | Role of water in protein folding, oligomerization, amyloidosis and miniprotein |
| Q57840247 | STRUCTURAL INSIGHT INTO THE POLYMORPHISM OF NNQNTF PROTOFIBRIL: IMPORTANCE OF INTERFACIAL WATER, POLAR AND AROMATIC RESIDUES |
| Q91424644 | Self-Assembly and Neurotoxicity of β-Amyloid (21-40) Peptide Fragment: The Regulatory Role of GxxxG Motifs |
| Q31045581 | Signatures of protein thermal denaturation and local hydrophobicity in domain specific hydration behavior: a comparative molecular dynamics study |
| Q51088255 | Site-directed analysis on protein hydrophobicity. |
| Q36761394 | Spatial Decomposition of Translational Water-Water Correlation Entropy in Binding Pockets |
| Q44019248 | Stepwise-resolved thermodynamics of hydrophobic self-assembly |
| Q91644931 | Structural Analysis of a Trimer of β2-Microgloblin Fragment by Molecular Dynamics Simulations |
| Q48046294 | Structural properties of amyloid β(1-40) dimer explored by replica exchange molecular dynamics simulations. |
| Q38549882 | Structural, morphological, and functional diversity of amyloid oligomers |
| Q47752760 | Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains |
| Q39097721 | Sum frequency and second harmonic generation from the surface of a liquid microjet |
| Q49318824 | The Aggregation Free Energy Landscapes of Polyglutamine Repeats |
| Q38548820 | The route to protein aggregate superstructures: Particulates and amyloid-like spherulites. |
| Q39924452 | The structure of chromophore-grafted amyloid-β(12-28) dimers in the gas-phase: FRET-experiment guided modelling |
| Q36294499 | Thermally induced protein unfolding probed by isotope-edited IR spectroscopy. |
| Q47603270 | Trace Water as Prominent Factor to Induce Peptide Self-Assembly: Dynamic Evolution and Governing Interactions in Ionic Liquids |
| Q51066927 | Ultrafast pump-probe and 2DIR anisotropy and temperature-dependent dynamics of liquid water within the E3B model. |
| Q41165117 | Ultraslow Water-Mediated Transmembrane Interactions Regulate the Activation of A2A Adenosine Receptor. |
| Q43600281 | Water and water-like liquids: relationships between structure, entropy and mobility |
| Q90001574 | Water follows polar and nonpolar protein surface domains |
| Q35205226 | Water molecular system dynamics associated with amyloidogenic nucleation as revealed by real time near infrared spectroscopy and aquaphotomics |
| Q30382591 | Wetting of nonconserved residue-backbones: A feature indicative of aggregation associated regions of proteins. |
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