| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1037549815 |
| P356 | DOI | 10.1038/ISMEJ.2015.30 |
| P932 | PMC publication ID | 4579471 |
| P698 | PubMed publication ID | 25822483 |
| P5875 | ResearchGate publication ID | 274235307 |
| P50 | author | Michael Bonkowski | Q22106938 |
| Tim Urich | Q54541275 | ||
| Ian Michael Clark | Q54709851 | ||
| Stefan Geisen | Q56938099 | ||
| Andreas Richter | Q42919685 | ||
| P2093 | author name string | Alexander T Tveit | |
| Mette M Svenning | |||
| P2860 | cites work | The Revised Classification of Eukaryotes | Q17792525 |
| CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms | Q21145731 | ||
| How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys | Q24795108 | ||
| Biology and pathogenesis of Acanthamoeba | Q26851628 | ||
| MRBAYES: Bayesian inference of phylogenetic trees | Q27860538 | ||
| RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models | Q27860746 | ||
| CAP3: A DNA sequence assembly program | Q27860964 | ||
| A revised classification of naked lobose amoebae (Amoebozoa: lobosa) | Q28244321 | ||
| Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page 1987; with description of Acramoeba dendroida n. g., n. sp., originally misidentified as 'Gephyramoeba sp.' | Q28251275 | ||
| Molecular phylogeny and classification of the lobose amoebae | Q28273073 | ||
| Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium | Q29399107 | ||
| jModelTest 2: more models, new heuristics and parallel computing | Q29546516 | ||
| SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building | Q29547665 | ||
| Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations | Q29616751 | ||
| Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils | Q30586938 | ||
| Can abundance of protists be inferred from sequence data: a case study of foraminifera | Q30592478 | ||
| Morphological and molecular characterization of a new terrestrial allogromiid species: Edaphoallogromia australica gen. et spec. nov. (Foraminifera) from Northern Queensland (Australia). | Q30664880 | ||
| Two new species of the genus Stenamoeba (Discosea, Longamoebia): cytoplasmic MTOC is present in one more amoebae lineage | Q30794126 | ||
| Quantitative estimation of flagellate community structure and diversity in soil samples. | Q30804790 | ||
| Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa). | Q31127904 | ||
| Eukaryotic diversity in historical soil samples | Q33253838 | ||
| Genetic diversity of eukaryotic microorganisms in Lake Taihu, a large shallow subtropical lake in china | Q33325849 | ||
| Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome | Q33346229 | ||
| Environmental rRNA inventories miss over half of protistan diversity | Q33393433 | ||
| Phylogeny, taxonomy, and astounding genetic diversity of glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). | Q33422730 | ||
| Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates. | Q44755577 | ||
| Parasitism and growth in the earthworm Lumbricus terrestris: fitness costs of the gregarine parasite Monocystis sp. | Q45273976 | ||
| Genetic analysis among environmental strains of Balamuthia mandrillaris recovered from an artificial lagoon and from soil in Sonora, Mexico. | Q45922816 | ||
| Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. | Q46102527 | ||
| Acanthamoeba everywhere: high diversity of Acanthamoeba in soils | Q46876475 | ||
| Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen | Q48075356 | ||
| DNA sequence quality trimming and vector removal | Q48654495 | ||
| Seasonal variability in abundance and diversity of soil gymnamoebae along a short transect in southeastern USA. | Q49292757 | ||
| Isolation of toxoplasma from soil. | Q54192522 | ||
| Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea) | Q56815174 | ||
| Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest | Q56995352 | ||
| Energetics, Patterns of Interaction Strengths, and Stability in Real Ecosystems | Q57308816 | ||
| Identification and Detection ofPhytophthora: Reviewing Our Progress, Identifying Our Needs | Q57430959 | ||
| Heterotrophic flagellates, centrohelid heliozoa and filose amoebae from marine and freshwater sites in the Antarctic | Q57441654 | ||
| Some Heterotrophic Flagellates from a Cultivated Garden Soil in Australia | Q57441660 | ||
| Molecular comparison of cultivable protozoa from a pristine and a polycyclic aromatic hydrocarbon polluted site | Q57451236 | ||
| “Missing” protists: a molecular prospective | Q60134710 | ||
| Population dynamics in the belowground food webs in two different agricultural systems | Q60550619 | ||
| Estimating the growth potential of the soil protozoan community | Q74005719 | ||
| Ultrastructural and Cytochemical Aspects of the Interaction Between the Mycoparasite Pythium oligandrum and Soilborne Plant Pathogens | Q79686294 | ||
| The life history of Flabellula baltica Smirnov (Gymnamoebae, Rhizopoda): adaptations to a spatially and temporally heterogeneous environment | Q82278166 | ||
| A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes | Q33487154 | ||
| Polymerase chain reaction primers miss half of rRNA microbial diversity | Q33495081 | ||
| Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms | Q33544847 | ||
| Highly diverse and seasonally dynamic protist community in a pristine peat bog. | Q33652234 | ||
| Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. | Q33917342 | ||
| Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing. | Q33920168 | ||
| Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil | Q34044793 | ||
| Invalidation of Hyperamoeba by transferring its species to other genera of Myxogastria | Q34095660 | ||
| Molecular evidence for widespread occurrence of Foraminifera in soils | Q34111073 | ||
| Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community | Q34171897 | ||
| Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study | Q34434402 | ||
| CREST--classification resources for environmental sequence tags | Q34474405 | ||
| Global biogeography of highly diverse protistan communities in soil | Q34509787 | ||
| Pathogenic and opportunistic free-living amoebae: Acanthamoeba spp., Balamuthia mandrillaris, Naegleria fowleri, and Sappinia diploidea | Q34618224 | ||
| The new micro-kingdoms of eukaryotes | Q34669362 | ||
| Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants | Q34830182 | ||
| Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach | Q35180091 | ||
| Oomycetes and fungi: similar weaponry to attack plants. | Q35558617 | ||
| Expansion of the 'Reticulosphere': Diversity of Novel Branching and Network-forming Amoebae Helps to Define Variosea (Amoebozoa). | Q35627848 | ||
| On a Cercopithifilaria sp. transmitted by Rhipicephalus sanguineus: a neglected, but widespread filarioid of dogs | Q35674822 | ||
| Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals | Q35863849 | ||
| Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. | Q36560760 | ||
| Balamuthia mandrillaris, N. G., N. Sp., agent of amebic meningoencephalitis in humans and other animals | Q36764880 | ||
| New insights into animal pathogenic oomycetes | Q37039182 | ||
| Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil | Q37123589 | ||
| High diversity of the 'Spumella-like' flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions | Q38881057 | ||
| Knowledge of morphology is still required when identifying new amoeba isolates by molecular techniques | Q38965663 | ||
| Discrepancy between species borders at morphological and molecular levels in the genus Cochliopodium (Amoebozoa, Himatismenida), with the description of Cochliopodium plurinucleolum n. sp. | Q39187000 | ||
| Density and diversity of protozoa in some arid Australian soils | Q39402594 | ||
| Notes on protozoa in agricultural soil with emphasis on heterotrophic flagellates and naked amoebae and their ecology | Q40587548 | ||
| A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology. | Q41855931 | ||
| Soil is the origin for the presence of Naegleria fowleri in the thermal recreational waters | Q43023117 | ||
| Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida | Q44076210 | ||
| Cryptic diversity within the choanoflagellate morphospecies complex Codosiga botrytis - phylogeny and morphology of ancient and modern isolates | Q44526057 | ||
| P433 | issue | 10 | |
| P304 | page(s) | 2178-2190 | |
| P577 | publication date | 2015-03-27 | |
| P1433 | published in | The ISME Journal | Q7741240 |
| P1476 | title | Metatranscriptomic census of active protists in soils | |
| P478 | volume | 9 |
| Q57091511 | A four year survey reveals a coherent pattern between occurrence of fruit bodies and soil amoebae populations for nivicolous myxomycetes |
| Q90681539 | Advances and Challenges in Metatranscriptomic Analysis |
| Q91259727 | Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil |
| Q64255523 | Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations |
| Q54513568 | Choanoflagellatea |
| Q90168195 | Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents |
| Q35894516 | Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs |
| Q63761709 | Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps |
| Q55184187 | Dissecting Community Structure in Wild Blueberry Root and Soil Microbiome. |
| Q26782498 | Diverse Applications of Environmental DNA Methods in Parasitology |
| Q59613660 | Diversity and abundance of microbial eukaryotes in stream sediments from Svalbard |
| Q113307358 | EUKulele: Taxonomic annotation of the unsung eukaryotic microbes |
| Q35964170 | Ecological and evolutionary significance of novel protist lineages |
| Q49611901 | Environmental filtering and phylogenetic clustering correlate with the distribution patterns of cryptic protist species. |
| Q64891960 | Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland. |
| Q36062532 | Fungal identification biases in microbiome projects |
| Q46287851 | Genetic barcoding of dark-spored myxomycetes (Amoebozoa)-Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies |
| Q36406493 | Grazing of leaf-associated Cercomonads (Protists: Rhizaria: Cercozoa) structures bacterial community composition and function |
| Q58834974 | Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes |
| Q35966801 | High Diversity Revealed in Leaf-Associated Protists (Rhizaria: Cercozoa) of Brassicaceae |
| Q57793336 | High-throughput identification and diagnostics of pathogens and pests: overview and practical recommendations |
| Q57071259 | Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation |
| Q39469735 | Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis. |
| Q52313681 | Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels. |
| Q28829509 | Local diversity of heathland Cercozoa explored by in-depth sequencing |
| Q39069311 | Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes |
| Q93185617 | Methods for quantification of growth and productivity in anaerobic microbiology and biotechnology |
| Q49729730 | Microbial Volatiles: Small Molecules with an Important Role in Intra- and Inter-Kingdom Interactions |
| Q93322051 | Microbial diversity-ecosystem function relationships across environmental gradients |
| Q31109099 | Multi-targeted metagenetic analysis of the influence of climate and environmental parameters on soil microbial communities along an elevational gradient |
| Q36108413 | Mycamoeba gemmipara nov. gen., nov. sp., the First Cultured Member of the Environmental Dermamoebidae Clade LKM74 and its Unusual Life Cycle. |
| Q67212780 | Mycobiome diversity: high-throughput sequencing and identification of fungi |
| Q48146041 | New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts |
| Q44008377 | New insights from molecular phylogenetics of amoebophagous fungi (Zoopagomycota, Zoopagales). |
| Q35628265 | Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa. |
| Q46714315 | Pack hunting by a common soil amoeba on nematodes. |
| Q56548981 | Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests |
| Q57117386 | Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado |
| Q102152248 | Protistan and fungal diversity in soils and freshwater lakes are substantially different |
| Q27321902 | Protistan community analysis: key findings of a large-scale molecular sampling |
| Q46297402 | Protists are an integral part of the Arabidopsis thaliana microbiome |
| Q41082202 | Quest of Soil Protists in a New Era. |
| Q36160102 | Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil |
| Q48326250 | Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias. |
| Q33725681 | Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. |
| Q40082212 | Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems |
| Q93052427 | Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management |
| Q90087016 | Soil ciliates of the Indian Delhi Region: Their community characteristics with emphasis on their ecological implications as sensitive bio-indicators for soil quality |
| Q43365876 | Soil protist communities form a dynamic hub in the soil microbiome |
| Q42379271 | TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms. |
| Q89641109 | The global-scale distributions of soil protists and their contributions to belowground systems |
| Q48183260 | The prey's scent - Volatile organic compound mediated interactions between soil bacteria and their protist predators. |
| Q51296915 | Thorough high-throughput sequencing analyses unravels huge diversities of soil parasitic protists. |
| Q89490049 | Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil |
| Q116675263 | Triangulopteris lacunata gen. et sp. nov. (Centroplasthelida), a New Centrohelid Heliozoan from Soil |
| Q49892321 | Utilization of organic nitrogen by arbuscular mycorrhizal fungi-is there a specific role for protists and ammonia oxidizers? |
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