2-chloromuconate and ClcR-mediated activation of the clcABD operon: in vitro transcriptional and DNase I footprint analyses

scientific article published on June 1997

2-chloromuconate and ClcR-mediated activation of the clcABD operon: in vitro transcriptional and DNase I footprint analyses is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/JB.179.11.3655-3663.1997
P932PMC publication ID179161
P698PubMed publication ID9171413

P2093author name stringA M Chakrabarty
M R Parsek
S M McFall
P2860cites workChemical structure and biodegradability of halogenated aromatic compounds. Conversion of chlorinated muconic acids into maleoylacetic acidQ24530751
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectorsQ26778475
Overproduction, purification, and characterization of chlorocatechol dioxygenase, a non-heme iron dioxygenase with broad substrate toleranceQ28321416
Activation of the trpBA promoter of Pseudomonas aeruginosa by TrpI protein in vitroQ28492640
The algT (algU) gene of Pseudomonas aeruginosa, a key regulator involved in alginate biosynthesis, encodes an alternative sigma factor (sigma E)Q28492957
Activation of the catBCA promoter: probing the interaction of CatR and RNA polymerase through in vitro transcriptionQ29346850
Production of single-stranded plasmid DNAQ29547328
Molecular biology of the LysR family of transcriptional regulatorsQ29615198
Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradationQ34634784
A mutation in the rpoA gene encoding the alpha subunit of RNA polymerase that affects metE-metR transcription in Escherichia coliQ35578106
catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticusQ35596735
Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase alpha subunitQ35599093
Molecular mechanisms of genetic adaptation to xenobiotic compoundsQ35655423
Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putidaQ35966343
Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoterQ35974923
Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: functional and evolutionary implicationsQ35980587
Protein-protein communication within the transcription apparatusQ36099108
Activation defects caused by mutations in Escherichia coli rpoA are promoter specificQ36116369
In vitro determination of the effect of indoleglycerol phosphate on the interaction of purified TrpI protein with its DNA-binding sitesQ36131317
Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putidaQ36136904
Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR familyQ36158196
Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4Q36161998
Sequence of the Pseudomonas aeruginosa trpI activator gene and relatedness of trpI to other procaryotic regulatory genesQ36172832
Abundant expression of Pseudomonas genes for chlorocatechol metabolismQ36203438
Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophusQ36321238
Regulation of nodulation gene expression by NodD in rhizobiaQ36382388
Cloning and complete nucleotide sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzymeQ36468533
Regulatory components in Citrobacter freundii ampC beta-lactamase inductionQ37523274
Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4.Q37680311
Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selectionQ38304435
The A. tumefaciens transcriptional activator OccR causes a bend at a target promoter, which is partially relaxed by a plant tumor metaboliteQ38328701
Microbial degradation of haloaromaticsQ39548234
Opine-regulated promoters and LysR-type regulators in the nopaline (noc) and octopine (occ) catabolic regions of Ti plasmids of Agrobacterium tumefaciensQ39930245
Analysis of the binding site of the LysR-type transcriptional activator TcbR on the tcbR and tcbC divergent promoter sequencesQ39931152
Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putidaQ39936931
Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory regionQ39941940
Ti plasmid-encoded octopine and nopaline catabolism in Agrobacterium: specificities of the LysR-type regulators OccR and NocR, and protein-induced DNA bendingQ42625542
Identification of the sigma E subunit of Escherichia coli RNA polymerase: a second alternate sigma factor involved in high-temperature gene expressionQ44496136
Genetic and molecular analysis of a regulatory region of the herbicide 2,4-dichlorophenoxyacetate catabolic plasmid pJP4.Q46319795
GcvA, a LysR-type transcriptional regulator protein, activates expression of the cloned Citrobacter freundii ampC beta-lactamase gene in Escherichia coli: cross-talk between DNA-binding proteinsQ48075308
Positive Regulators of Opine-Inducible Promoters in the Nopaline and Octopine Catabolism Regions of Ti PlasmidsQ48220387
Critical nucleotides in the interaction of a LysR-type regulator with its target promoter region. catBC promoter activation by CatR.Q54635497
In vivo interactions of the NahR transcriptional activator with its target sequences. Inducer-mediated changes resulting in transcription activation.Q54695585
DNA-dependent RNA polymerase from Pseudomonas aeruginosaQ70378560
Microbial degradation of synthetic recalcitrant compoundsQ79143379
P433issue11
P407language of work or nameEnglishQ1860
P304page(s)3655-3663
P577publication date1997-06-01
P1433published inJournal of BacteriologyQ478419
P1476title2-chloromuconate and ClcR-mediated activation of the clcABD operon: in vitro transcriptional and DNase I footprint analyses
P478volume179