Scoring function based on weighted residue network

scientific article published on 2 December 2011

Scoring function based on weighted residue network is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.3390/IJMS12128773
P932PMC publication ID3257100
P698PubMed publication ID22272103
P5875ResearchGate publication ID221772581

P2093author name stringShan Chang
Xiong Jiao
P2860cites workThe architecture of complex weighted networksQ24631525
High-quality binary protein interaction map of the yeast interactome networkQ24651397
Crystal structure of opsin in its G-protein-interacting conformationQ27652301
Modelling protein docking using shape complementarity, electrostatics and biochemical informationQ28249132
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Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation.Q33618483
Prediction of protein-binding areas by small-world residue networks and application to dockingQ34029424
Present and future challenges and limitations in protein-protein dockingQ39949452
Small-world communication of residues and significance for protein dynamicsQ40269752
Docking and scoring: applications to drug discovery in the interactomics era.Q44096745
Comparison of several molecular docking programs: pose prediction and virtual screening accuracy.Q47708648
ZRANK: reranking protein docking predictions with an optimized energy function.Q51042892
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Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring.Q51665410
Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.Q51682700
Prediction and scoring of docking poses with pyDock.Q51905722
A protein-protein docking benchmark.Q52015253
Knowledge-based scoring function to predict protein-ligand interactions.Q52083236
Use of pair potentials across protein interfaces in screening predicted docked complexes.Q52214942
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.Q52310162
Small-world view of the amino acids that play a key role in protein folding.Q53666366
Characterization and modeling of weighted networksQ56762588
Network Analysis of Protein Structures Identifies Functional ResiduesQ58008231
Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein−Protein DockingQ58428614
Construction and application of the weighted amino acid network based on energyQ80740348
Amino acid network and its scoring application in protein-protein dockingQ80842049
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P407language of work or nameEnglishQ1860
P304page(s)8773-8786
P577publication date2011-12-02
P1433published inInternational Journal of Molecular SciencesQ3153277
P1476titleScoring function based on weighted residue network
P478volume12

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cites work (P2860)
Q36546500A modified amino acid network model contains similar and dissimilar weight
Q42579166Network model of a protein globule
Q46115863Score_set: a CAPRI benchmark for scoring protein complexes
Q30360131The construction of an amino acid network for understanding protein structure and function.

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