Integrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress

scientific article published on 18 October 2011

Integrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1074/MCP.M111.009019
P932PMC publication ID3270098
P698PubMed publication ID22008207

P50authorJohn P. BowmanQ41680751
Kari S GobiusQ50731049
Chawalit KocharunchittQ59696067
Tom RossQ74210862
P2093author name stringThea King
P2860cites workConserved and variable functions of the sigmaE stress response in related genomesQ24811266
T-profiler: scoring the activity of predefined groups of genes using gene expression dataQ24813372
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Exploration, normalization, and summaries of high density oligonucleotide array probe level dataQ27861098
Correlation between protein and mRNA abundance in yeastQ28137554
A statistical model for identifying proteins by tandem mass spectrometryQ28186251
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database searchQ28211385
Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stressQ28250175
Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networksQ28471595
The Proteomics Identifications database: 2010 updateQ28749244
Java Treeview--extensible visualization of microarray dataQ29547226
A model for random sampling and estimation of relative protein abundance in shotgun proteomicsQ29547316
Open source clustering softwareQ29547702
TANDEM: matching proteins with tandem mass spectraQ29615238
Integrated genomic and proteomic analyses of a systematically perturbed metabolic networkQ29616021
Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experimentsQ31028802
Discordant protein and mRNA expression in lung adenocarcinomasQ32148037
Proteome response of Escherichia coli fed-batch culture to temperature downshiftQ33218093
Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal mediumQ33304230
Characterization of the Cpx regulon in Escherichia coli strain MC4100.Q33395214
Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phaseQ33516038
The sigmaE and Cpx regulatory pathways: overlapping but distinct envelope stress responsesQ33632494
Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stressQ33721504
Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli.Q33744185
Exopolysaccharide production is required for development of Escherichia coli K-12 biofilm architectureQ33905553
Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitationQ33927430
DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxideQ33996654
Cold shock response in Escherichia coliQ34004240
Roles of the glutathione- and thioredoxin-dependent reduction systems in the Escherichia coli and saccharomyces cerevisiae responses to oxidative stress.Q34052736
Hemorrhagic Colitis Associated with a RareEscherichia coliSerotypeQ34256166
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigationsQ34445192
Osmoregulation and its importance to food-borne microorganisms.Q34618636
Submicromolar hydrogen peroxide disrupts the ability of Fur protein to control free-iron levels in Escherichia coliQ34624969
Correlation of enterohemorrhagic Escherichia coli O157 prevalence in feces, hides, and carcasses of beef cattle during processingQ35102179
Time-dependent proteome alterations under osmotic stress during aerobic and anaerobic growth in Escherichia coliQ35130080
Stress and how bacteria cope with death and survival.Q36007272
Protein identification using 2D-LC-MS/MS.Q36049614
Cold-sensitive mutants of Escherichia coli resulting from increased feedback inhibitionQ36377980
The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistanceQ36483740
Regulation of capsular polysaccharide synthesis in Escherichia coli K12.Q37479221
Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coliQ37573783
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.Q37583338
Prevalence of Shiga toxin-producing Escherichia coli in beefQ37953585
A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coliQ38358029
Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stressesQ38608652
Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase systemQ39679110
Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarraysQ39680318
Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coliQ39887844
A role for exopolysaccharides in the protection of microorganisms from desiccation.Q39914266
False discovery rates and related statistical concepts in mass spectrometry-based proteomicsQ40145988
Integrated genomic and proteomic analyses of gene expression in Mammalian cellsQ40538549
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivityQ41863185
Growth rate-dependent global effects on gene expression in bacteriaQ42062295
Overproduction of exopolysaccharides by an Escherichia coli K-12 rpoS mutant in response to osmotic stressQ42121314
New method for exopolysaccharide determination in culture broth using stirred ultrafiltration cellsQ42514881
Ion transport and osmotic adjustment in Escherichia coli in response to ionic and non-ionic osmotica.Q42597427
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.Q42645426
Global responses of Escherichia coli to adverse conditions determined by microarrays and FT-IR spectroscopyQ43273861
The potential use of chilling to control the growth of Enterobacteriaceae on porcine carcasses and the incidence of E. coli O157:H7 in pigsQ43622407
Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiaeQ44049342
Protective effect of exopolysaccharide colanic acid of Escherichia coli O157:H7 to osmotic and oxidative stressQ44911006
Characterization of transport through the periplasmic histidine permease using proteoliposomes reconstituted by dialysis.Q45988095
Comparison of label-free methods for quantifying human proteins by shotgun proteomics.Q46568113
Rates of chilling to 0 degrees C: implications for the survival of microorganisms and relationship with membrane fluidity modifications.Q46865437
Excess histidine enzymes cause AICAR-independent filamentation in Escherichia coli.Q50158349
Absence of insertions among spontaneous mutants of Salmonella typhimuriumQ50195685
Spectral index for assessment of differential protein expression in shotgun proteomics.Q50650030
Dynamical analysis of gene networks requires both mRNA and protein expression information.Q52075450
Proteomics: theoretical and experimental considerations.Q52213033
Influence of tyrosine-kinase Wzc activity on colanic acid production in Escherichia coli K12 cells.Q54447877
Modification of lipopolysaccharide with colanic acid (M-antigen) repeats in Escherichia coli.Q54448386
Role of colanic acid exopolysaccharide in the survival of enterohaemorrhagic Escherichia coli O157:H7 in simulated gastrointestinal fluids.Q54465157
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.Q54495569
The RcsC sensor kinase is required for normal biofilm formation in Escherichia coli K-12 and controls the expression of a regulon in response to growth on a solid surface.Q54514553
Changes in Escherichia coli transcriptome during acclimatization at low temperature.Q54517502
RcsCDB His-Asp phosphorelay system negatively regulates the flhDC operon in Escherichia coli.Q54521795
Prevalence and numbers of Escherichia coli O157:H7 in minced beef and beef burgers from butcher shops and supermarkets in the Republic of IrelandQ57719480
Outbreaks of enterohaemorrhagic Escherichia coli O157:H7 infection by two different genotype strains in Japan, 1996Q71547937
A new spectrophotometric test for the detection of methylpentoseQ75996713
Modelling the effects of temperature, water activity, pH and lactic acid concentration on the growth rate of Escherichia coliQ78727175
P433issue1
P921main subjecttranscriptomeQ252857
Escherichia coli O157:H7 str. SakaiQ21102930
P304page(s)M111.009019
P577publication date2011-10-18
P1433published inMolecular & Cellular ProteomicsQ6895932
P1476titleIntegrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress
P478volume11

Reverse relations

cites work (P2860)
Q97554119A high-throughput genomic screen identifies a role for the plasmid-borne type II secretion system of Escherichia coli O157:H7 (Sakai) in plant-microbe interactions
Q33777591Chemical composition and the potential for proteomic transformation in cancer, hypoxia, and hyperosmotic stress
Q37016468Cultural, Transcriptomic, and Proteomic Analyses of Water-Stressed Cells of Actinobacterial Strains Isolated from Compost: Ecological Implications in the Fed-Batch Composting Process.
Q38193881Escherichia coli O157: Insights into the adaptive stress physiology and the influence of stressors on epidemiology and ecology of this human pathogen
Q47146282Escherichia coli O157:H7 Converts Plant-Derived Choline to Glycine Betaine for Osmoprotection during Pre- and Post-harvest Colonization of Injured Lettuce Leaves
Q38063574Exoproteomics: exploring the world around biological systems
Q42233920Global Regulator of Virulence A (GrvA) Coordinates Expression of Discrete Pathogenic Mechanisms in Enterohemorrhagic Escherichia coli through Interactions with GadW-GadE.
Q35110872Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt downshift in water activity.
Q33753598Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt temperature downshift.
Q30578962Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli
Q46753712Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates
Q92135974New Insights on the Role of the pLMST6 Plasmid in Listeria monocytogenes Biocide Tolerance and Virulence
Q38191377Omics approaches in food safety: fulfilling the promise?
Q93051924Overexpressed L20 Rescues 50S Ribosomal Subunit Assembly Defects of bipA-Deletion in Escherichia coli
Q37396989Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling
Q59329289Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp ()
Q57788660Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress
Q64081235Proteomic and Metabolomic Profiling of Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions
Q61444516Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilamp
Q39557041The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria
Q58322327Titration of Folate Pathway Enzymes
Q59132116Transcriptome and Proteome of Fish-Pathogenic Are Modulated by Temperature
Q90135375Unified feature association networks through integration of transcriptomic and proteomic data
Q36313808Xerotolerant bacteria: surviving through a dry spell.

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