Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans

scientific article published on February 2004

Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1101/GR.1524804
P932PMC publication ID327096
P698PubMed publication ID14762059
P5875ResearchGate publication ID8887108

P50authorMakedonka MitrevaQ28805278
Thomas B NutmanQ72525765
P2093author name stringJohn Martin
James P McCarter
Sandra W Clifton
Todd Wylie
Robert H Waterston
Deana Pape
Mike Dante
Brandi Chiapelli
P2860cites workAnalysis and functional classification of transcripts from the nematode Meloidogyne incognitaQ21194870
Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approachQ21194882
Gene ontology: tool for the unification of biologyQ23781406
The daf-4 gene encodes a bone morphogenetic protein receptor controlling C. elegans dauer larva developmentQ24318966
KEGG: kyoto encyclopedia of genes and genomesQ24515297
The Caenorhabditis elegans muscle-affecting gene unc-87 encodes a novel thin filament-associated proteinQ24673193
Basic local alignment search toolQ25938991
Genome sequence of the nematode C. elegans: a platform for investigating biologyQ27860527
Base-calling of automated sequencer traces using phred. I. Accuracy assessmentQ27860665
Systematic functional analysis of the Caenorhabditis elegans genome using RNAiQ27860839
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegansQ27860867
The InterPro database, an integrated documentation resource for protein families, domains and functional sitesQ28140863
Generation and analysis of 280,000 human expressed sequence tagsQ28294585
Genes that regulate both development and longevity in Caenorhabditis elegansQ28611326
daf-16: An HNF-3/forkhead family member that can function to double the life-span of Caenorhabditis elegansQ28611332
InterProScan--an integration platform for the signature-recognition methods in InterProQ29547336
Functional genomic analysis of C. elegans chromosome I by systematic RNA interferenceQ29547812
The significance of digital gene expression profilesQ29614357
A molecular evolutionary framework for the phylum NematodaQ29617373
Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAiQ29618443
Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome IIIQ29618444
Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism mapQ29618616
Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans.Q30696645
The Brugia malayi genome project: expressed sequence tags and gene discoveryQ30700846
Identification of abundantly expressed novel and conserved genes from the infective larval stage of Toxocara canis by an expressed sequence tag strategyQ30756908
Parasitic helminth genomics. Filarial Genome ProjectQ30761288
A hookworm allergen which strongly resembles calreticulinQ30766949
Molecular cloning and characterisation of a venom allergen AG5-like cDNA from Meloidogyne incognitaQ30839255
A survey of genes expressed in adults of the human hookworm, Necator americanus.Q30848132
A cDNA encoding the highly immunodominant antigen of Strongyloides stercoralis: gamma-subunit of isocitrate dehydrogenase (NAD+).Q30862516
Molecular phylogenetic analysis of the genus Strongyloides and related nematodesQ30865594
400000 nematode ESTs on the Net.Q30961465
A cloned antigen for serological diagnosis of Wuchereria bancrofti microfilaremia with daytime blood samplesQ31043621
Serum immunoglobulin G4 antibodies to the recombinant antigen, Ll-SXP-1, are highly specific for Loa loa infectionQ31123406
Developmental switching in the parasitic nematode Strongyloides stercoralis is controlled by the ASF and ASI amphidial neurons.Q32035335
cDNA cloning of porcine brain prolyl endopeptidase and identification of the active-site seryl residueQ33383788
Exploiting the life cycle of Strongyloides ratiiQ33656424
Genes and genomes of Necator americanus and related hookwormsQ33872080
Analysis of expressed sequence tags indicates 35,000 human genesQ33903985
Syndrome of hyperinfection with Strongyloides stercoralisQ34276255
Post-genomic nematode parasitologyQ34282167
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic speciesQ34309653
Diagnosis of Strongyloides stercoralis infectionQ34350393
Molecular and genetic analyses of the Caenorhabditis elegans dpy-2 and dpy-10 collagen genes: a variety of molecular alterations affect organismal morphologyQ34439145
Epitopes of the Onchocerca volvulus RAL1 antigen, a member of the calreticulin family of proteins, recognized by sera from patients with onchocerciasis.Q34536124
sqv mutants of Caenorhabditis elegans are defective in vulval epithelial invaginationQ34941722
Myotactin, a novel hypodermal protein involved in muscle-cell adhesion in Caenorhabditis elegansQ36293307
Construction of cDNA libraries from limiting amounts of materialQ36674482
New members of the collagen superfamilyQ36755745
Molecular and biochemical aspects of nematode collagensQ36767683
Cloning and characterization of Ancylostoma-secreted protein. A novel protein associated with the transition to parasitism by infective hookworm larvaeQ36799624
Nematode gene sequences, update for june 2002.Q37050742
Cuticular proteins of Brugia filarial parasitesQ37604340
Evaluation of a recombinant parasite antigen for the diagnosis of lymphatic filariasis.Q38974024
High-throughput plasmid DNA purification for 3 cents per sampleQ39729748
The cuticle of the nematode Caenorhabditis elegans: a complex collagen structureQ40744699
Temporal reiteration of a precise gene expression pattern during nematode development.Q41075635
Predictive value of an enzyme-linked immunosorbent assay (ELISA) for the serodiagnosis of strongyloidiasisQ41284050
Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.Q41729283
Albumin and a Dialyzable Serum Factor Stimulate Feeding In vitro by Third-Stage Larvae of the Canine Hookworm Ancylostoma caninumQ42170484
Oxidative stress and ageing in Caenorhabditis elegansQ42239558
A proline-rich structural protein of the surface sheath of larval Brugia filarial nematode parasitesQ43424899
Immunoaffinity-isolated antigens induce protective immunity against larval Strongyloides stercoralis in miceQ44020984
Ingestion of double-stranded RNA by preparasitic juvenile cyst nematodes leads to RNA interferenceQ44104768
Experimental disseminated strongyloidiasis in Erythrocebus patas. I. Pathology.Q45223527
daf-1, a C. elegans gene controlling dauer larva development, encodes a novel receptor protein kinaseQ47069364
Identification of novel sequences and codon usage in Strongyloides stercoralis.Q48061487
A gene expression map for Caenorhabditis elegans.Q48342750
PCR amplification of putative gpa-2 and gpa-3 orthologs from the (A+T)-rich genome of Strongyloides stercoralisQ48370179
Genome evolution and developmental constraint in Caenorhabditis elegans.Q52121114
Genomic analysis of gene expression in C. elegans.Q53902691
Expression of the Microfilarial Sheath Protein 2 (shp2) of the Filarial ParasitesLitomosoides sigmodontisandBrugia malayiQ57051437
The neurons of class ALD mediate thermotaxis in the parasitic nematode, Strongyloides stercoralisQ64215478
Species-specific differences in heterogonic development of serially transferred free-living generations of Strongyloides planiceps and Strongyloides stercoralisQ67932895
Identification, synthesis and immunogenicity of cuticular collagens from the filarial nematodes Brugia malayi and Brugia pahangiQ69968237
Duodenal strongyloides stercoralis infectionQ72048753
Database resources of the National Center for Biotechnology InformationQ73315901
Strongyloides stercoralis: identification of antigens in natural human infections from endemic areas of the United StatesQ73629211
Suppression of secreted acetylcholinesterase expression in Nippostrongylus brasiliensis by RNA interferenceQ74333399
Mutations that perturb vulval invagination in C. elegansQ74581602
Transgene expression in Strongyloides stercoralis following gonadal microinjection of DNA constructsQ77556570
P433issue2
P921main subjectCaenorhabditis elegansQ91703
Strongyloides stercoralisQ244111
comparative genomicsQ1147112
P304page(s)209-220
P577publication date2004-02-01
P1433published inGenome ResearchQ5533485
P1476titleComparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans
P478volume14

Reverse relations

cites work (P2860)
Q33247216A microarray analysis of gene expression in the free-living stages of the parasitic nematode Strongyloides ratti.
Q30839228A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans.
Q57187563A transcriptomic analysis of the phylum Nematoda
Q30886589Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae
Q30478840Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species
Q34260046Comparison of the transcriptional profiles of head and body lice
Q36558899Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock
Q94101606Current Awareness on Comparative and Functional Genomics
Q33769376DNA immunization with Na+-K+ ATPase (Sseat-6) induces protective immunity to larval Strongyloides stercoralis in mice
Q33230398Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii
Q42608519Developmental plasticity and the evolution of parasitism in an unusual nematode, Parastrongyloides trichosuri
Q33301752Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines
Q36182111Expressed sequence tags from life cycle stages of Trichinella spiralis: application to biology and parasite control
Q38551159From parasite genomes to one healthy world: Are we having fun yet?
Q35564261Functional reconstitution of Haemonchus contortus acetylcholine receptors in Xenopus oocytes provides mechanistic insights into levamisole resistance.
Q42909680Gene interactions in Caenorhabditis elegans define DPY-31 as a candidate procollagen C-proteinase and SQT-3/ROL-4 as its predicted major target
Q33253541Genome comparison using Gene Ontology (GO) with statistical testing
Q35091848Genome-wide tissue-specific gene expression, co-expression and regulation of co-expressed genes in adult nematode Ascaris suum
Q28478955HelmCoP: an online resource for helminth functional genomics and drug and vaccine targets prioritization
Q28476305Helminth genomics: The implications for human health
Q34173662In silico secretome analysis approach for next generation sequencing transcriptomic data.
Q33358099Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans
Q36178999Invertebrate muscles: muscle specific genes and proteins
Q24803534Investigating hookworm genomes by comparative analysis of two Ancylostoma species
Q34845409It's no fluke: the planarian as a model for understanding schistosomes
Q35610664Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti--identification of stage-specific proteases
Q33900095Microarray-based analysis of differential gene expression between infective and noninfective larvae of Strongyloides stercoralis
Q33360417Mining the secretome of the root-knot nematode Meloidogyne chitwoodi for candidate parasitism genes
Q33419513Molecular determinants archetypical to the phylum Nematoda
Q24653334NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
Q24656022Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics
Q27486381On the Extent and Origins of Genic Novelty in the Phylum Nematoda
Q27304470Pan-phylum Comparison of Nematode Metabolic Potential
Q35827502RNA-Seq Based Identification of Candidate Parasitism Genes of Cereal Cyst Nematode (Heterodera avenae) during Incompatible Infection to Aegilops variabilis
Q34474570RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.
Q33404443Sequence mining and transcript profiling to explore cyst nematode parasitism
Q34351150Systems biology studies of adult paragonimus lung flukes facilitate the identification of immunodominant parasite antigens
Q36421739The biology and genomics of Strongyloides
Q37625960The dauer hypothesis and the evolution of parasitism: 20 years on and still going strong
Q36130178The genome of Strongyloides spp. gives insights into protein families with a putative role in nematode parasitism.
Q47331266The reversibility of constraints on size and fecundity in the parasitic nematode Strongyloides ratti.
Q37179539The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi.
Q35592330Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant-parasitic nematode Bursaphelenchus xylophilus
Q34329249Transcriptome analyses reveal protein and domain families that delineate stage-related development in the economically important parasitic nematodes, Ostertagia ostertagi and Cooperia oncophora
Q33467610Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3
Q33511116Transcripts analysis of the entomopathogenic nematode Steinernema carpocapsae induced in vitro with insect haemolymph
Q34905028Transgenesis and neuronal ablation in parasitic nematodes: revolutionary new tools to dissect host-parasite interactions

Search more.