Transcriptome-wide identification and study of cancer-specific splicing events across multiple tumors.

scientific article published on March 2015

Transcriptome-wide identification and study of cancer-specific splicing events across multiple tumors. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.18632/ONCOTARGET.3145
P932PMC publication ID4466652
P698PubMed publication ID25749525
P5875ResearchGate publication ID273324724

P50authorShawn M. GomezQ41049180
Zefeng WangQ55154444
P2093author name stringYihsuan S Tsai
Daniel Dominguez
P2860cites workAn automated method for finding molecular complexes in large protein interaction networksQ21284295
WWOX, a novel WW domain-containing protein mapping to human chromosome 16q23.3-24.1, a region frequently affected in breast cancerQ22254002
CD44 variant regulates redox status in cancer cells by stabilizing the xCT subunit of system xc(-) and thereby promotes tumor growthQ24296787
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RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferationQ39044270
GPR116, an adhesion G-protein-coupled receptor, promotes breast cancer metastasis via the Gαq-p63RhoGEF-Rho GTPase pathway.Q39099776
A complex network of factors with overlapping affinities represses splicing through intronic elementsQ39225814
Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rulesQ39277603
Alternative splicing of CD44 mRNA by ESRP1 enhances lung colonization of metastatic cancer cell.Q39335846
Splicing factor hnRNP A2/B1 regulates tumor suppressor gene splicing and is an oncogenic driver in glioblastomaQ39540908
HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancerQ39763266
Modification of alternative splicing of Bcl-x pre-mRNA in prostate and breast cancer cells. analysis of apoptosis and cell death.Q43559520
The Extra-domain A of Fibronectin Is a Vascular Marker of Solid Tumors and MetastasesQ57912086
Misregulation of pre-mRNA alternative splicing in cancerQ27007114
Gene expression profiling predicts clinical outcome of breast cancerQ27860732
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesQ27860739
A gene-expression signature as a predictor of survival in breast cancerQ27860945
Alternative isoform regulation in human tissue transcriptomesQ27861118
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene listsQ28131785
CD44 in cancerQ28217782
Mutational landscape and significance across 12 major cancer typesQ28300353
Discovery and saturation analysis of cancer genes across 21 tumour typesQ28305204
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Understanding alternative splicing: towards a cellular codeQ29615085
Supervised risk predictor of breast cancer based on intrinsic subtypesQ29617404
Predictive identification of exonic splicing enhancers in human genesQ29618621
Identification of genes periodically expressed in the human cell cycle and their expression in tumorsQ29619131
Mitogen-activated protein kinase phosphorylation of splicing factor 45 (SPF45) regulates SPF45 alternative splicing site utilization, proliferation, and cell adhesionQ30423199
The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration.Q34097169
Deconstructing the molecular portraits of breast cancerQ34154147
The splicing factor RBM4 controls apoptosis, proliferation, and migration to suppress tumor progressionQ34157516
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Engineering splicing factors with designed specificitiesQ34235465
Heterogeneous nuclear ribonucleoprotein H1/H2-dependent unsplicing of thymidine phosphorylase results in anticancer drug resistanceQ34536974
Analysis and design of RNA sequencing experiments for identifying isoform regulationQ34565989
CD44 splice isoform switching in human and mouse epithelium is essential for epithelial-mesenchymal transition and breast cancer progressionQ34627193
The RNA-binding protein QKI suppresses cancer-associated aberrant splicingQ35145133
Aberrant and alternative splicing in cancerQ35936123
The gene encoding the splicing factor SF2/ASF is a proto-oncogeneQ36129226
Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events.Q36446169
RNA sequencing of cancer reveals novel splicing alterationsQ36782437
NMD: a multifaceted response to premature translational terminationQ37675497
Alternative splicing: a pivotal step between eukaryotic transcription and translationQ38079475
Hallmarks of alternative splicing in cancerQ38171229
A day in the life of the spliceosomeQ38180972
The alternative splicing side of cancer.Q38198391
Splicing factor hnRNPH drives an oncogenic splicing switch in gliomasQ38967517
P433issue9
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
P304page(s)6825-6839
P577publication date2015-03-01
P1433published inOncotargetQ1573155
P1476titleTranscriptome-wide identification and study of cancer-specific splicing events across multiple tumors
P478volume6

Reverse relations

cites work (P2860)
Q37010219A splicing isoform of TEAD4 attenuates the Hippo-YAP signalling to inhibit tumour proliferation
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Q36991152Functional genomics analyses of RNA-binding proteins reveal the splicing regulator SNRPB as an oncogenic candidate in glioblastoma
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Q92450883Genome-wide analysis reveals the association between alternative splicing and DNA methylation across human solid tumors
Q39368650RNA processing as an alternative route to attack glioblastoma.
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Q50074498SRSF10-mediated IL1RAP alternative splicing regulates cervical cancer oncogenesis via mIL1RAP-NF-κB-CD47 axis.
Q37000093SURVIV for survival analysis of mRNA isoform variation
Q92067653Survival-associated alternative splicing signatures in soft tissue sarcomas
Q55449946Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells.
Q58802939Transcriptome-wide analysis of alternative mRNA splicing signature in the diagnosis and prognosis of stomach adenocarcinoma
Q57049086psichomics: graphical application for alternative splicing quantification and analysis

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