| P50 | author | Manolo Gouy | Q52200211 |
| P2093 | author name string | Guy Perrière | |
| | Jean-Pierre Flandrois | |
| P2860 | cites work | BLAST+: architecture and applications | Q21284368 |
| | Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | Q22066209 |
| | Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target | Q24550788 |
| | Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases | Q24563009 |
| | Infernal 1.0: inference of RNA alignments | Q24646921 |
| | 16S ribosomal DNA amplification for phylogenetic study | Q24681548 |
| | The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy | Q24681903 |
| | The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis | Q24793962 |
| | Characterisation of methionine adenosyltransferase from Mycobacterium smegmatis and M. tuberculosis | Q24805923 |
| | Having a BLAST with bioinformatics (and avoiding BLASTphemy). | Q24806148 |
| | The neighbor-joining method: a new method for reconstructing phylogenetic trees | Q25939010 |
| | TreeDyn: towards dynamic graphics and annotations for analyses of trees | Q27496507 |
| | MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods | Q27860929 |
| | Microbe Hunting | Q27890382 |
| | GenBank | Q28254689 |
| | Rapid Sanger sequencing of the 16S rRNA gene for identification of some common pathogens | Q28539849 |
| | FastTree 2--approximately maximum-likelihood trees for large alignments | Q28748616 |
| | EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences | Q29013815 |
| | An rpoD-based PCR procedure for the identification of Pseudomonas species and for their detection in environmental samples. | Q51779388 |
| | Comparison of 16S rRNA sequencing with conventional and commercial phenotypic techniques for identification of enterococci from the marine environment. | Q51941829 |
| | Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology | Q55980601 |
| | Phylogenetic definitions and taxonomic philosophy | Q56269818 |
| | Characterization of bacterial consortia from diesel-contaminated Antarctic soils: Towards the design of tailored formulas for bioaugmentation | Q57571006 |
| | The sodA gene as a target for phylogenetic dissection of the genus Haemophilus and accurate identification of human clinical isolates | Q63285555 |
| | Amplification and sequencing of variable regions in bacterial 23S ribosomal RNA genes with conserved primer sequences | Q72096806 |
| | 16S rRNA sequencing in routine bacterial identification: a 30-month experiment | Q79961686 |
| | Identification of Mycobacterium using the EF-Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene | Q80651679 |
| | Bioinformatics in the complete genome sequence era | Q80760720 |
| | ARB: a software environment for sequence data | Q29547354 |
| | Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy | Q29547619 |
| | SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building | Q29547665 |
| | Phylogeny.fr: robust phylogenetic analysis for the non-specialist | Q29547666 |
| | Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology | Q29614356 |
| | 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates | Q29617102 |
| | Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity | Q30476944 |
| | Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting | Q33196233 |
| | Development of a recA gene-based identification approach for the entire Burkholderia genus | Q33218347 |
| | Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment. | Q33236359 |
| | Mycobacterium szulgai infection in a captive population of African clawed frogs (Xenopus tropicalis). | Q33274825 |
| | Molecular bacterial community analysis of clean rooms where spacecraft are assembled | Q33291863 |
| | Remote access to ACNUC nucleotide and protein sequence databases at PBIL. | Q33297971 |
| | Assigning strains to bacterial species via the internet | Q33403073 |
| | BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments | Q33631749 |
| | The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies | Q33632280 |
| | Phylogeny and Identification of Nocardia Species on the Basis of Multilocus Sequence Analysis | Q33693512 |
| | Opinion: Re-evaluating prokaryotic species | Q33989786 |
| | Recognition of potentially novel human disease-associated pathogens by implementation of systematic 16S rRNA gene sequencing in the diagnostic laboratory. | Q34120568 |
| | Use of groESL as a target for identification of Abiotrophia, Granulicatella, and Gemella species. | Q34190503 |
| | Evaluation of the Andromas matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of aerobically growing Gram-positive bacilli. | Q34301924 |
| | Evaluation of MALDI-TOF mass spectrometry for the identification of medically-important yeasts in the clinical laboratories of Dijon and Lille hospitals | Q34306260 |
| | Differentiation of Streptococcus pneumoniae from nonpneumococcal streptococci of the Streptococcus mitis group by matrix-assisted laser desorption ionization-time of flight mass spectrometry | Q34311423 |
| | PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes | Q34363801 |
| | Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories. | Q34597806 |
| | The RDP (Ribosomal Database Project). | Q34624083 |
| | Mycobacterium species related to M. leprae and M. lepromatosis from cows with bovine nodular thelitis | Q34641402 |
| | Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). | Q34733209 |
| | Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system. | Q34789018 |
| | BIBI, a bioinformatics bacterial identification tool | Q34974905 |
| | Usefulness of the MicroSeq 500 16S ribosomal DNA-based bacterial identification system for identification of clinically significant bacterial isolates with ambiguous biochemical profiles | Q34992055 |
| | Comparison of MALDI-TOF MS with HPLC and nucleic acid sequencing for the identification of Mycobacterium species in cultures using solid medium and broth. | Q35068713 |
| | Microbial monitoring of spacecraft and associated environments | Q35642102 |
| | What does the future hold for clinical microbiology? | Q35709176 |
| | Evaluation of the GenBank, EzTaxon, and BIBI services for molecular identification of clinical blood culture isolates that were unidentifiable or misidentified by conventional methods | Q35943011 |
| | 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls | Q36878347 |
| | Identifications of pathogens - a bioinformatic point of view | Q37177858 |
| | Identification of species with DNA-based technology: current progress and challenges | Q37348024 |
| | The rpoB gene as a tool for clinical microbiologists | Q37350492 |
| | Molecular identification of clinical "difficult-to-identify" microbes from sequencing 16S ribosomal DNA and internal transcribed spacer 2. | Q37529103 |
| | Illustration of the difficulty of identifying Streptococcus equi strains at the subspecies level through a case of endocarditis in an immunocompetent man. | Q37546265 |
| | Routine ribosomal PCR and DNA sequencing for detection and identification of bacteria | Q37772893 |
| | Comparison of rpoB gene sequencing, 16S rRNA gene sequencing, gyrB multiplex PCR, and the VITEK2 system for identification of Acinetobacter clinical isolates | Q38445574 |
| | LPSN--list of prokaryotic names with standing in nomenclature | Q38492580 |
| | ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. | Q38591585 |
| | Assignment of reference 5'-end 16S rDNA sequences and species-specific sequence polymorphisms improves species identification of Nocardia. | Q42563908 |
| | Phylogeny and identification of Enterococci by atpA gene sequence analysis | Q42868678 |
| | Aerococcus urinae and Aerococcus sanguinicola, two frequently misidentified uropathogens | Q43060133 |
| | Case report of Aurantimonas altamirensis bloodstream infection | Q43179771 |
| | Septic arthritis due to a Sneathia species most closely related to Sneathia sanguinegens | Q43729385 |
| | Extended surveillance for CBPP in a free country: Challenges and solutions regarding the potential caprine reservoir. | Q43996710 |
| | Detection and identification of bacteria in clinical samples by 16S rRNA gene sequencing: comparison of two different approaches in clinical practice | Q44006626 |
| | Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction | Q44809305 |
| | Relevance and diagnostics of selected bacterial pathogens of poultry | Q45009229 |
| | Detection of Deefgea chitinilytica in freshwater ornamental fish | Q45146756 |
| | Evaluation of the DNA-dependent RNA polymerase β-subunit gene (rpoB) for phytoplasma classification and phylogeny | Q45199210 |
| | Differentiation of Mycobacterium species by analysis of the heat-shock protein 65 gene (hsp65). | Q45316142 |
| | Catheter-associated bloodstream infection caused by Leifsonia aquatica in a haemodialysis patient: a case report | Q46687372 |
| | Accurate and universal delineation of prokaryotic species | Q47918373 |
| | Validation of a partial rpoB gene sequence as a tool for phylogenetic identification of aeromonads isolated from environmental sources. | Q48064895 |
| | The closest BLAST hit is often not the nearest neighbor | Q50114443 |
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P921 | main subject | phylogenetics | Q171184 |
| | automation | Q184199 |
| P304 | page(s) | 251 | |
| P577 | publication date | 2015-08-12 | |
| P1433 | published in | BMC Bioinformatics | Q4835939 |
| P1476 | title | leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences | |
| P478 | volume | 16 | |