Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes

scientific article published on 28 December 2006

Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1534/GENETICS.106.066258
P932PMC publication ID1855141
P698PubMed publication ID17194781
P5875ResearchGate publication ID6605587

P50authorMarc A. SuchardQ16214224
P2093author name stringFang Fang
Karin S Dorman
Vladimir N Minin
P2860cites workThe key role for local base order in the generation of multiple forms of China HIV-1 B'/C intersubtype recombinantsQ24811995
Dating of the human-ape splitting by a molecular clock of mitochondrial DNAQ27860908
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo MethodQ28243160
A fine-scale map of recombination rates and hotspots across the human genomeQ29614885
Bayesian selection of continuous-time Markov chain evolutionary modelsQ29615127
Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa.Q30327384
Recombinant viruses and early global HIV-1 epidemicQ30342738
Rates and dates of divergence between AIDS virus nucleotide sequencesQ30404796
Estimating recombination rates from population-genetic dataQ30884546
Cross-reactions between the cytotoxic T-lymphocyte responses of human immunodeficiency virus-infected African and European patientsQ33782574
Identification of a major restriction in HIV-1 intersubtype recombinationQ33863217
Human immunodeficiency virus. Phylogeny and the origin of HIV-1.Q33944278
The evolutionary genomics of pathogen recombinationQ34168118
The fine-scale structure of recombination rate variation in the human genomeQ34315919
Homologous recombination near and far from DNA breaks: alternative roles and contrasting viewsQ34432225
Mechanisms of retroviral recombinationQ34432232
A coalescent-based method for detecting and estimating recombination from gene sequencesQ34614575
Application of coalescent methods to reveal fine-scale rate variation and recombination hotspotsQ34645709
Where the crossovers are: recombination distributions in mammals.Q35778662
Inactivation of the human immunodeficiency virus type 1 inhibitory elements allows Rev-independent expression of Gag and Gag/protease and particle formationQ35887511
A graphical method for detecting recombination in phylogenetic data setsQ36890347
Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypesQ36960293
The HIV-1 repeated sequence R as a robust hot-spot for copy-choice recombinationQ39099158
High genetic diversity of HIV-1 strains in Chad, West Central AfricaQ39651672
The structure of HIV-1 genomic RNA in the gp120 gene determines a recombination hot spot in vivoQ40541616
Genotypic and phenotypic analysis of HIV type 1 primary isolates from western CameroonQ42668215
In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: determination of hot spots and correlation with sequence similarityQ43809425
Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage.Q43972207
Bayesian estimates of disease maps: how important are priors?Q44196628
Dual multiple change-point model leads to more accurate recombination detection.Q45173339
A new subtype of HIV-1 gag sequence detected in TaiwanQ45300554
Reconstructing evolution of sequences subject to recombination using parsimonyQ46404849
Predominance of subtype A and G HIV type 1 in Nigeria, with geographical differences in their distributionQ47877703
A likelihood method for the detection of selection and recombination using nucleotide sequencesQ48053300
Identification of a preferred region for recombination and mutation in HIV-1 gag.Q48178264
Recombinant strains of HIV type 1 in the United KingdomQ48372684
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov modelsQ48472283
The kissing hairpin sequence promotes recombination within the HIV-I 5' leader region.Q52543360
Recombination in HIV-1Q57998149
Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanningQ70929876
Interactions of INS (CRS) elements and the splicing machinery regulate the production of Rev-responsive mRNAsQ71020737
Evidence for a mechanism of recombination during reverse transcription dependent on the structure of the acceptor RNAQ73023500
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
P304page(s)1773-1785
P577publication date2006-12-28
P1433published inGeneticsQ3100575
P1476titlePhylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes
P478volume175

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cites work (P2860)
Q37354027A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies.
Q92734404A spatially varying change points model for monitoring glaucoma progression using visual field data
Q33419822Accurate detection of recombinant breakpoints in whole-genome alignments
Q33374425Bayesian modeling of recombination events in bacterial populations
Q33974268Conversion events in gene clusters
Q35552659Ecosystem simplification, biodiversity loss and plant virus emergence.
Q34018505Methodology and software to detect viral integration site hot-spots
Q91677098Molecular and geographic characterization of hiv-1 bf recombinant viruses
Q30376865Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus
Q55363352Patterns of genomic site inheritance in HIV-1M inter-subtype recombinants delineate the most likely genomic sites of subtype-specific adaptation.
Q33769126Patterns of recombination in HIV-1M are influenced by selection disfavouring the survival of recombinants with disrupted genomic RNA and protein structures
Q33350201Phylogenetic detection of recombination with a Bayesian prior on the distance between trees
Q33700519Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes--divide and conquer
Q36837122Quantitative trait loci (QTL) analysis for rice grain width and fine mapping of an identified QTL allele gw-5 in a recombination hotspot region on chromosome 5.
Q38301018Recombination in viruses: mechanisms, methods of study, and evolutionary consequences.

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