Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity

scientific article published on 4 June 2015

Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity is …
instance of (P31):
scholarly articleQ13442814

External links are
P818arXiv ID1502.04993
P8978DBLP publication IDjournals/jcns/ZaytsevMD15
P356DOI10.1007/S10827-015-0565-5
P932PMC publication ID4493949
P698PubMed publication ID26041729
P5875ResearchGate publication ID272521830
P894zbMATH Open document ID1382.92102

P50authorMoritz DegerQ41046459
P2093author name stringAbigail Morrison
Yury V Zaytsev
P2860cites workSpike-timing dependence of structural plasticity explains cooperative synapse formation in the neocortexQ21145311
Normalized auto- and cross-covariance functions for neuronal spike train analysisQ43439460
Whole-brain functional imaging at cellular resolution using light-sheet microscopyQ44984064
Prediction and decoding of retinal ganglion cell responses with a probabilistic spiking model.Q46818698
Fluctuations and information filtering in coupled populations of spiking neurons with adaptationQ47735868
Exact subthreshold integration with continuous spike times in discrete-time neural network simulationsQ47846164
Dynamics of sparsely connected networks of excitatory and inhibitory spiking neuronsQ47899491
Likelihood methods for point processes with refractorinessQ47952594
Predicting spike timing of neocortical pyramidal neurons by simple threshold modelsQ48570869
Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activityQ48826398
Learning precisely timed spikes.Q50667723
Maximum likelihood estimation of cascade point-process neural encoding modelsQ51634878
Modeling compositionality by dynamic binding of synfire chainsQ51635933
Stable propagation of synchronous spiking in cortical neural networksQ52133631
Dynamics of neuronal firing correlation: modulation of "effective connectivity".Q52533697
A Limited Memory Algorithm for Bound Constrained OptimizationQ56560278
On the limited memory BFGS method for large scale optimizationQ57311064
Simultaneously Recorded Trains of Action Potentials: Analysis and Functional InterpretationQ72345644
Symbolic transfer entropyQ81376767
On quadrature methods for refractory point process likelihoodsQ85363349
A Granger causality measure for point process models of ensemble neural spiking activityQ21563486
Network anatomy and in vivo physiology of visual cortical neuronsQ24633731
Successful reconstruction of a physiological circuit with known connectivity from spiking activity aloneQ28534619
Structural and molecular interrogation of intact biological systemsQ29616195
State-space analysis of time-varying higher-order spike correlation for multiple neural spike train dataQ30000858
Beyond the cortical column: abundance and physiology of horizontal connections imply a strong role for inputs from the surroundQ30475797
A synaptic organizing principle for cortical neuronal groupsQ30499294
Inference of neuronal network spike dynamics and topology from calcium imaging dataQ30560538
Algorithms for the analysis of ensemble neural spiking activity using simultaneous-event multivariate point-process modelsQ30571267
Impact of network topology on inference of synaptic connectivity from multi-neuronal spike data simulated by a large-scale cortical network modelQ30587225
The elusive concept of brain connectivityQ30804916
Common-input models for multiple neural spike-train dataQ31133418
Collective dynamics in human and monkey sensorimotor cortex: predicting single neuron spikesQ33646280
A 1024-Channel CMOS Microelectrode Array With 26,400 Electrodes for Recording and Stimulation of Electrogenic Cells In VitroQ33656914
Statistical inference for assessing functional connectivity of neuronal ensembles with sparse spiking dataQ33715208
Wiring specificity in the direction-selectivity circuit of the retinaQ34169590
A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effectsQ34346784
A mesoscale connectome of the mouse brainQ34413358
From electrical to chemical transmission in the central nervous systemQ34525896
Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect?Q34565655
Modeling the impact of common noise inputs on the network activity of retinal ganglion cellsQ36577782
Spatio-temporal correlations and visual signalling in a complete neuronal populationQ37197936
Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functionsQ37249035
Inferring functional connections between neurons.Q37350285
The science of neural interface systemsQ37463140
Optical probing of neuronal ensemble activityQ37620903
In vitro microelectrode array technology and neural recordingsQ37864658
Multi-electrode array technologies for neuroscience and cardiologyQ38079118
Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanismsQ39677048
A general and efficient method for incorporating precise spike times in globally time-driven simulationsQ39822985
Bayesian inference for generalized linear models for spiking neuronsQ41276496
Maximum likelihood analysis of spike trains of interacting nerve cellsQ41400005
Bayesian inference of functional connectivity and network structure from spikesQ41824474
Inferring synaptic connectivity from spatio-temporal spike patternsQ41877412
Structural plasticity of circuits in cortical neuropilQ42145044
Fast inference in generalized linear models via expected log-likelihoodsQ42263616
P4510describes a project that usesscikit-learnQ1026367
P433issue1
P6104maintained by WikiProjectWikiProject MathematicsQ8487137
P304page(s)77-103
P577publication date2015-06-04
P1433published inJournal of Computational NeuroscienceQ15753630
P1476titleReconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity
P478volume39

Reverse relations

cites work (P2860)
Q93045886Computational Neuroscience: Mathematical and Statistical Perspectives
Q39249429Distinguishing between direct and indirect directional couplings in large oscillator networks: Partial or non-partial phase analyses?
Q49806244Dynamics of Evolving Feed-Forward Neural Networks and Their Topological Invariants
Q30000049Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data
Q55348451Ensemble stacking mitigates biases in inference of synaptic connectivity.
Q35959303Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome
Q39197260From point process observations to collective neural dynamics: Nonlinear Hawkes process GLMs, low-dimensional dynamics and coarse graining
Q47222395Functional network stability and average minimal distance - A framework to rapidly assess dynamics of functional network representations.
Q64110456High-resolution directed human connectomes and the Consensus Connectome Dynamics
Q58700489Identification of excitatory-inhibitory links and network topology in large-scale neuronal assemblies from multi-electrode recordings
Q91011780Inferring and validating mechanistic models of neural microcircuits based on spike-train data
Q49721923Learning neural connectivity from firing activity: efficient algorithms with provable guarantees on topology
Q36289471On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs.
Q90440823Reconstructing neuronal circuitry from parallel spike trains
Q33361580Seizure Prediction: Science Fiction or Soon to Become Reality?
Q55365396Toward Rigorous Parameterization of Underconstrained Neural Network Models Through Interactive Visualization and Steering of Connectivity Generation.

Search more.