Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

scientific article published on 21 February 2007

Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JVI.02050-06
P8608Fatcat IDrelease_p3jgdkdk5je2rolhgs4xb6mk2m
P932PMC publication ID1900147
P698PubMed publication ID17314156
P5875ResearchGate publication ID6491982

P50authorBruce D. WalkerQ23770361
Philip J. R. GoulderQ72618990
Photini KiepielaQ77767253
David HeckermanQ89548037
Senica ChettyQ104979323
David C. NickleQ106615189
Christian BranderQ42392436
Gerald H LearnQ54541884
Tanmoy BhattacharyaQ55414889
James MullinsQ57555076
Bette KorberQ30505218
P2093author name stringChristine M Rousseau
P2860cites workRecombination in AIDS virusesQ22252829
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Statistical significance for genomewide studiesQ24681264
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
Timing the ancestor of the HIV-1 pandemic strainsQ28137904
Dual HIV-1 infection associated with rapid disease progressionQ28247153
A Dual Superinfection and Recombination Within HIV-1 Subtype B 12 Years After PrimoinfectionQ58415390
Detecting hypermutations in viral sequences with an emphasis on G --> A hypermutationQ73929271
Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population levelQ74171545
Recombination of HIV type 1C (C'/C") in Ethiopia: possible link of EthHIV-1C' to subtype C sequences from the high-prevalence epidemics in India and Southern AfricaQ42615626
Novel evolutionary analyses of full-length HIV type 1 subtype C molecular clones from Cape Town, South AfricaQ42691001
HIV-1 co/super-infection in intravenous drug usersQ43770016
Recombination: Multiply infected spleen cells in HIV patientsQ43923409
Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents.Q43951264
Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.Q44291572
Full-length genome analysis of human immunodeficiency virus type 1 subtype C in Brazil.Q45419773
Clade B HIV-1 superinfection with wild-type virus after primary infection with drug-resistant clade B virusQ45724887
A specific subtype C of human immunodeficiency virus type 1 circulates in BrazilQ45729868
A cluster of HIV type 1 subtype C sequences from Ethiopia, observed in full genome analysis, is not sustained in subgenomic regionsQ46202511
No evidence for recombination between HIV type 1 and HIV type 2 within the envelope region in dually seropositive individuals from Senegal.Q46312038
Characterization of full-length HIV type 1 subtype C sequences from South AfricaQ46574841
Presence of multiple HIV subtypes and a high frequency of subtype chimeric viruses in heterosexually infected womenQ46960501
Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomesQ48088168
Molecular epidemiology of dual HIV-1/HIV-2 seropositive adults from Senegal, West AfricaQ48233296
Recombination following superinfection by HIV-1.Q48967809
Incidence of HIV superinfection following primary infection.Q53886132
Persistence of multidrug-resistant HIV-1 in primary infection leading to superinfection.Q53890023
Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele AssociationsQ56880587
Incidence of HIV‐1 Dual Infection and Its Association with Increased Viral Load Set Point in a Cohort of HIV‐1 Subtype C–Infected Female Sex WorkersQ57478288
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence dataQ29614291
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombinationQ29616724
Analyzing the mosaic structure of genesQ29616749
Maximum likelihood estimation of recombination rates from population data.Q30619350
An automated genotyping system for analysis of HIV-1 and other microbial sequencesQ33220974
Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from BotswanaQ33648343
High rate of recombination throughout the human immunodeficiency virus type 1 genomeQ33793169
In-depth, longitudinal analysis of viral quasispecies from an individual triply infected with late-stage human immunodeficiency virus type 1, using a multiple PCR primer approachQ33843376
Human immunodeficiency virus type 1 env sequences from Calcutta in eastern India: identification of features that distinguish subtype C sequences in India from other subtype C sequencesQ33848275
Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtypeQ33912015
Evaluation of methods for detecting recombination from DNA sequences: computer simulationsQ33950030
A cladistic measure of gene flow inferred from the phylogenies of allelesQ33955939
In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfectionQ33987333
Early evolution of the human immunodeficiency virus type 1 subtype C epidemic in rural MalawiQ34353535
Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spotsQ34355430
Molecular clock-like evolution of human immunodeficiency virus type 1.Q34357919
Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design?Q34364357
Molecular characteristics of human immunodeficiency virus type 1 subtype C viruses from KwaZulu-Natal, South Africa: implications for vaccine and antiretroviral control strategiesQ34471322
Frequency of HIV-1 dual subtype infections, including intersubtype superinfections, among injection drug users in Bangkok, Thailand.Q34555223
Consequences of recombination on traditional phylogenetic analysis.Q34610694
Pervasive genomic recombination of HIV-1 in vivoQ34645720
Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1.Q37511508
Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombinationQ37746512
Identification of diverse HIV type 1 subtypes and dual HIV type 1 infection in pregnant Ugandan womenQ38885799
Frequency of HIV type 1 dual infection and HIV diversity: analysis of low- and high-risk populations in Mbeya Region, TanzaniaQ39064697
A predominantly HIV type 1 subtype C-restricted epidemic in South African urban populationsQ39489253
HIV-1 intra-subtype superinfection rates: estimates using a structured coalescent with recombinationQ39701475
Evolution of R5 and X4 human immunodeficiency virus type 1 gag sequences in vivo: evidence for recombinationQ40630382
Forward mutation rate of human immunodeficiency virus type 1 in a T lymphoid cell lineQ41219560
P433issue9
P407language of work or nameEnglishQ1860
P921main subjectSouth AfricaQ258
P304page(s)4492-4500
P577publication date2007-02-21
P1433published inJournal of VirologyQ1251128
P1476titleExtensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections
P478volume81

Reverse relations

cites work (P2860)
Q35842544A considerable proportion of CRF01_AE strains in China originated from circulating intrasubtype recombinant forms (CIRF).
Q33687232Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics
Q28471994An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1
Q37042458An exploratory algorithm to identify intra-host recombinant viral sequences
Q28471671Avoidance of protein fold disruption in natural virus recombinants
Q33313878Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads
Q37452002Clade-specific evolution mediated by HLA-B*57/5801 in human immunodeficiency virus type 1 clade A1 p24.
Q37188701Close phylogenetic relationship between Angolan and Romanian HIV-1 subtype F1 isolates
Q34395579Cross-border sexual transmission of the newly emerging HIV-1 clade CRF51_01B
Q26865754Current Trends of HIV Recombination Worldwide
Q35264750Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy
Q34936859Frequent intra-subtype recombination among HIV-1 circulating in Tanzania
Q26866018Genetic architecture of HIV-1 genes circulating in north India & their functional implications
Q57196807Genetic diversity and molecular epidemiology of HIV transmission
Q55717691HIV-1 diversity among young women in rural South Africa: HPTN 068.
Q36369628HIV-1 drug resistance genotyping from antiretroviral therapy (ART) naïve and first-line treatment failures in Djiboutian patients
Q42653285HIV-1 sequences in the epidemic suggest an alternative pathway for the generation of the Long Terminal Repeats
Q33455743HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk?
Q22241756Identifying HIV-1 dual infections
Q30372035Identifying the important HIV-1 recombination breakpoints.
Q37097501Implications of recombination for HIV diversity
Q40501110Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering.
Q50991279Integrating genealogical and dynamical modelling to infer escape and reversion rates in HIV epitopes.
Q43742510Interclade recombination in porcine parvovirus strains
Q35076953Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitors
Q35993707Interplay between HIV-1 and Host Genetic Variation: A Snapshot into Its Impact on AIDS and Therapy Response.
Q30235142Molecular Epidemiology of Human Immunodeficiency Virus.
Q37236847Multiple-infection and recombination in HIV-1 within a longitudinal cohort of women
Q34824481Pathogen-pathogen interaction: a syndemic model of complex biosocial processes in disease
Q30402036Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning
Q34264608Quantification of unintegrated HIV-1 DNA at the single cell level in vivo
Q30394442RDP4: Detection and analysis of recombination patterns in virus genomes
Q30410154Reviewing the history of HIV-1: spread of subtype B in the Americas
Q36250427Sequence insertions in the HIV type 1 subtype C viral promoter predominantly generate an additional NF-κB binding site
Q39167829Syndemics and the biosocial conception of health
Q29542470TOWARD A CRITICAL BIOSOCIAL MODEL OF ECOHEALTH IN SOUTHERN AFRICA: THE HIV/AIDS AND NUTRITION INSECURITY SYNDEMIC
Q36898680Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia
Q36194357Time-scale of minor HIV-1 complex circulating recombinant forms from Central and West Africa
Q37815331Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease

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