Identification of Sequence Specificity of 5-Methylcytosine Oxidation by Tet1 Protein with High-Throughput Sequencing

scientific article published on 30 December 2015

Identification of Sequence Specificity of 5-Methylcytosine Oxidation by Tet1 Protein with High-Throughput Sequencing is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/CBIC.201500646
P698PubMed publication ID26715454

P2093author name stringHiroshi Sugiyama
Anandhakumar Chandran
Seiichiro Kizaki
P2860cites workTissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediatesQ21089989
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brainQ22065852
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brainQ24299862
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1Q24316558
Sequence logos: a new way to display consensus sequencesQ24598387
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosineQ24614582
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNAQ24632387
WebLogo: A Sequence Logo GeneratorQ27860646
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolutionQ28265420
Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosineQ28281009
MEME SUITE: tools for motif discovery and searchingQ29547204
The discovery of 5-formylcytosine in embryonic stem cell DNA.Q34027511
Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine.Q34029463
Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.Q34034581
Guiding the design of synthetic DNA-binding molecules with massively parallel sequencingQ34421960
Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.Q35008732
Design of sequence-specific DNA binding molecules for DNA methyltransferase inhibitionQ35087309
Advancing small-molecule-based chemical biology with next-generation sequencing technologies.Q35447270
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.Q36517044
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.Q36659158
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic primingQ36853522
Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencingQ36921964
Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA.Q37055345
Ten-eleven translocation 1 (Tet1) is regulated by O-linked N-acetylglucosamine transferase (Ogt) for target gene repression in mouse embryonic stem cellsQ37175040
5-Hydroxymethylcytosine, the sixth base of the genomeQ37891924
CGmCGCG is a versatile substrate with which to evaluate Tet protein activityQ38311627
Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosineQ41938716
Identification of TET1 Partners That Control Its DNA-Demethylating Function.Q42743227
Quantification of the sixth DNA base hydroxymethylcytosine in the brainQ43003710
P433issue5
P407language of work or nameEnglishQ1860
P921main subject5-(hydroxymethyl)cytosineQ238535
high-throughput sequencingQ112147935
P304page(s)403-406
P577publication date2015-12-30
P1433published inChemBioChemQ634395
P1476titleIdentification of Sequence Specificity of 5-Methylcytosine Oxidation by Tet1 Protein with High-Throughput Sequencing
P478volume17

Reverse relations

cites work (P2860)
Q39037391Formation and repair of oxidatively generated damage in cellular DNA.
Q51113188Preferential 5-Methylcytosine Oxidation in the Linker Region of Reconstituted Positioned Nucleosomes by Tet1 Protein.
Q48372043Target specificity of mammalian DNA methylation and demethylation machinery