Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

scientific article published on 27 February 2012

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2012PNAS..109.4950G
P356DOI10.1073/PNAS.1119910109
P932PMC publication ID3323973
P698PubMed publication ID22371564
P5875ResearchGate publication ID221867718

P2093author name stringMichael M Desai
Oskar Hallatschek
Benjamin H Good
Daniel J Balick
Igor M Rouzine
P2860cites workMolecular Evolution Over the Mutational LandscapeQ22064602
Fitness effects of advantageous mutations in evolving Escherichia coli populationsQ22066182
EVOLUTION IN MENDELIAN POPULATIONSQ5418627
Fitness effects of fixed beneficial mutations in microbial populations.Q54541810
Diminishing Returns from Mutation Supply Rate in Asexual PopulationsQ56920120
Surfing during population expansions promotes genetic revolutions and structurationQ57197873
The effect of linkage on limits to artificial selectionQ72951099
RNA virus evolution via a fitness-space modelQ74568198
Molecular evolution under fitness fluctuationsQ80904821
The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virusQ22066390
Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteriaQ22122042
Genome evolution and adaptation in a long-term experiment with Escherichia coliQ22122199
Sex releases the speed limit on evolutionQ22122522
The Distribution of Fitness Effects Among Beneficial MutationsQ24543521
Beneficial mutation selection balance and the effect of linkage on positive selectionQ24685465
The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosaQ28474903
Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174.Q33325656
Rate of adaptation in large sexual populationsQ33688865
Multi-site adaptation in the presence of infrequent recombinationQ33770993
Beneficial mutations and the dynamics of adaptation in asexual populations.Q33856627
The speed of evolution and maintenance of variation in asexual populationsQ34330675
The solitary wave of asexual evolutionQ34470274
Mutational effects and population dynamics during viral adaptation challenge current modelsQ34477455
The noisy edge of traveling wavesQ34549815
Evolution of human immunodeficiency virus under selection and weak recombinationQ34573357
Distributions of beneficial fitness effects in RNA.Q34573559
Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller modelQ34589967
The speed of adaptation in large asexual populationsQ34645731
Adaptive mutations in bacteria: high rate and small effectsQ34661718
From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation.Q34949551
Genetic variation and the fate of beneficial mutations in asexual populationsQ35222738
Emergent neutrality in adaptive asexual evolutionQ35620493
Clonal interference in large populationsQ36156834
The stochastic edge in adaptive evolutionQ36665927
A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutationQ36969656
Beneficial fitness effects are not exponential for two viruses.Q37009661
Clonal interference, multiple mutations and adaptation in large asexual populationsQ37011413
The relation between reproductive value and genetic contributionQ38518001
Mutations of intermediate effect are responsible for adaptation in evolving Pseudomonas fluorescens populationsQ38786690
Clonal interference and the evolution of RNA viruses.Q40929879
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptationQ41853709
Gene surfing in expanding populationsQ48377569
An equivalence principle for the incorporation of favorable mutations in asexual populations.Q50736355
The fate of competing beneficial mutations in an asexual population.Q54262235
P433issue13
P407language of work or nameEnglishQ1860
P921main subjectbeneficial mutationQ111187232
P304page(s)4950-4955
P577publication date2012-02-27
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleDistribution of fixed beneficial mutations and the rate of adaptation in asexual populations
P478volume109

Reverse relations

cites work (P2860)
Q42235123A predictive fitness model for influenza
Q42371063Accumulation of Deleterious Mutations During Bacterial Range Expansions
Q41582528An ABC method for estimating the rate and distribution of effects of beneficial mutations
Q58744877Antigenic evolution of viruses in host populations
Q46267501Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies.
Q47106674Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach.
Q38254752Beyond genome sequencing: lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer.
Q90171624Chance and necessity in the pleiotropic consequences of adaptation for budding yeast
Q35882324Chance and risk in adaptive evolution
Q47104008Clonal Heterogeneity Influences the Fate of New Adaptive Mutations.
Q54251489Clonal interference can cause wavelet-like oscillations of multilocus linkage disequilibrium.
Q36268135Clonal interference in the evolution of influenza
Q38940477Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves
Q42379133Competition and fixation of cohorts of adaptive mutations under Fisher geometrical model
Q34539776Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.
Q29011147Deleterious Passengers in Adapting Populations
Q90596125Directional Selection Rather Than Functional Constraints Can Shape the G Matrix in Rapidly Adapting Asexuals
Q51300318Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations.
Q37739024Dynamics of molecular evolution in RNA virus populations depend on sudden versus gradual environmental change
Q89759208Early prediction of antigenic transitions for influenza A/H3N2
Q60503746Effective models and the search for quantitative principles in microbial evolution
Q92440432Epistasis detectably alters correlations between genomic sites in a narrow parameter window
Q42741265Evolution of Mutation Rates in Rapidly Adapting Asexual Populations.
Q42380178Evolution of drift robustness in small populations
Q58728935Evolutionary footprint of epistasis
Q90345321Experimental Studies of Evolutionary Dynamics in Microbes
Q35105761Fifteen years later: hard and soft selection sweeps confirm a large population number for HIV in vivo
Q55362856Fluctuations uncover a distinct class of traveling waves.
Q30248269Forecasting Epidemiological and Evolutionary Dynamics of Infectious Diseases
Q36535424Genealogies of rapidly adapting populations
Q36596516Genetic diversity and the structure of genealogies in rapidly adapting populations
Q35133316Genetic diversity in the interference selection limit.
Q91272592High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast
Q33895065How to infer relative fitness from a sample of genomic sequences
Q52368963Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model.
Q35909939Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection
Q21144916Limits to the rate of adaptive substitution in sexual populations
Q43231261Long-term diversity and genome adaptation of Acinetobacter baylyi in a minimal-medium chemostat
Q45261637Long-term dynamics of adaptation in asexual populations
Q28539052Loss and recovery of genetic diversity in adapting populations of HIV
Q28647014Molecular Clock of Neutral Mutations in a Fitness-Increasing Evolutionary Process
Q51148518Multiscale Evolutionary Dynamics of Host-Associated Microbiomes.
Q27310283Mutation rules and the evolution of sparseness and modularity in biological systems
Q51026723On the effect of phenotypic dimensionality on adaptation and optimality.
Q90389384On the feasibility of saltational evolution
Q57135429Parallel genetic adaptation across environments differing in mode of growth or resource availability
Q34358875Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
Q38154687Population size and the rate of evolution.
Q54226446Population size changes and selection drive patterns of parallel evolution in a host-virus system.
Q54295384Predicting evolution.
Q40499709Quantitative evolutionary dynamics using high-resolution lineage tracking
Q40492307RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence
Q30555815Rate of adaptation in sexuals and asexuals: a solvable model of the Fisher-Muller effect
Q47378055Selecting among three basic fitness landscape models: Additive, multiplicative and stickbreaking
Q37695988Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures
Q41410650Stronger selection can slow down evolution driven by recombination on a smooth fitness landscape.
Q92572554Survival of the simplest in microbial evolution
Q88909708The Effect of Strong Purifying Selection on Genetic Diversity
Q47136281The Nonstationary Dynamics of Fitness Distributions: Asexual Model with Epistasis and Standing Variation
Q39450951The competition between simple and complex evolutionary trajectories in asexual populations.
Q90833163The dynamics of adaptive genetic diversity during the early stages of clonal evolution
Q37269691The dynamics of genetic draft in rapidly adapting populations
Q46297608The dynamics of molecular evolution over 60,000 generations.
Q36177833The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans
Q35579831The evolutionarily stable distribution of fitness effects
Q37696346The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations
Q28235419The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps
Q34864177The impact of macroscopic epistasis on long-term evolutionary dynamics
Q34398123The rate of adaptation in large sexual populations with linear chromosomes
Q26864257The spectrum of adaptive mutations in experimental evolution
Q42248684Time-Resolved Tracking of Mutations Reveals Diverse Allele Dynamics during Escherichia coli Antimicrobial Adaptive Evolution to Single Drugs and Drug Pairs.
Q40446556What drives parallel evolution?: How population size and mutational variation contribute to repeated evolution.
Q34387997Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
Q33619649Within-Epitope Interactions Can Bias CTL Escape Estimation in Early HIV Infection

Search more.