PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

scientific article

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1038/MSB4100182
P932PMC publication ID2063582
P698PubMed publication ID17940529
P5875ResearchGate publication ID5904136

P50authorRuedi AebersoldQ7377799
Henry LamQ43153100
Johan MalmströmQ57009792
Bernd BodenmillerQ88700613
Alexander SchmidtQ89878742
P2093author name stringPaul T Shannon
Oliver Rinner
David Campbell
Bertran Gerrits
Ralph Schlapbach
Christian Panse
Lukas N Mueller
Hoo-Keun Lee
Patrick G Pedrioli
P2860cites workA probability-based approach for high-throughput protein phosphorylation analysis and site localizationQ21735934
Functional organization of the yeast proteome by systematic analysis of protein complexesQ24292209
Large-scale characterization of HeLa cell nuclear phosphoproteinsQ24300834
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
From genomics to chemical genomics: new developments in KEGGQ24538628
A systematic analysis of human disease-associated gene sequences in Drosophila melanogasterQ24619672
Large-scale mapping of human protein-protein interactions by mass spectrometryQ24670192
Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifsQ24671990
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathwaysQ24676473
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MSQ24680943
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometryQ24805791
FlyBase: anatomical data, images and queriesQ25257918
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiaeQ27860755
Advances in protein complex analysis using mass spectrometryQ35990045
Drosophila, the golden bug, emerges as a tool for human geneticsQ35998774
An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cellsQ40156841
A systematic approach to the analysis of protein phosphorylationQ43563012
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.Q52222665
Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis.Q52671958
Reproducible isolation of distinct, overlapping segments of the phosphoproteomeQ57205837
Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide PrecolumnsQ57666311
A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage SitesQ57825167
Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatographyQ70287638
The implications of proteolytic background for shotgun proteomicsQ80392907
High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycositesQ80651821
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomesQ27860838
A novel genetic system to detect protein-protein interactionsQ27860915
A generic protein purification method for protein complex characterization and proteome explorationQ27861087
Quantitative monitoring of gene expression patterns with a complementary DNA microarrayQ27861102
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseQ27861106
Global, in vivo, and site-specific phosphorylation dynamics in signaling networksQ27864128
Systematic genetic analysis with ordered arrays of yeast deletion mutantsQ28131618
Genome-wide location and function of DNA binding proteinsQ28131765
A protein interaction map of Drosophila melanogasterQ28131783
Mass spectrometry-based proteomicsQ28182890
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database searchQ28211385
Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometryQ28266730
Upstream and downstream of mTORQ28277365
Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocinQ28362238
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometryQ29547311
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBFQ29547783
Integrated genomic and proteomic analyses of a systematically perturbed metabolic networkQ29616021
High density synthetic oligonucleotide arraysQ29616560
Signaling--2000 and beyondQ29617413
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiaeQ29618445
Transforming gene product of Rous sarcoma virus phosphorylates tyrosineQ29620005
The Gaggle: an open-source software system for integrating bioinformatics software and data sourcesQ30353531
A uniform proteomics MS/MS analysis platform utilizing open XML file formatsQ30478423
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data setsQ31016283
Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.Q31164900
State-of-the-art in phosphoproteomicsQ33224302
Mass spectrometry and protein analysisQ33239890
Development and validation of a spectral library searching method for peptide identification from MS/MS.Q33273391
A high-quality catalog of the Drosophila melanogaster proteomeQ33282389
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.Q33858553
Genetic control of size in DrosophilaQ34112814
Mass spectrometry in proteomicsQ34441839
Genetic analysis of insulin signaling in DrosophilaQ34594275
Insulin/IGF and target of rapamycin signaling: a TOR de force in growth controlQ35057313
UniPep--a database for human N-linked glycosites: a resource for biomarker discoveryQ35606070
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networksQ35749545
P275copyright licenseCreative Commons Attribution-NonCommercial-NoDerivs 2.5 GenericQ19068204
P921main subjecteukaryoteQ19088
DrosophilaQ312154
phosphoproteinQ423934
systems biologyQ815297
proteomeQ860947
arthropod proteinsQ75832127
P304page(s)139
P577publication date2007-10-16
P1433published inMolecular Systems BiologyQ2261043
P1476titlePhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells
P478volume3

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cites work (P2860)
Q4228291714-3-3 regulation of Ncd reveals a new mechanism for targeting proteins to the spindle in oocytes.
Q27346827A Combination of CRISPR/Cas9 and Standardized RNAi as a Versatile Platform for the Characterization of Gene Function
Q34797435A Novel Phosphopeptide Microarray Based Interactome Map in Breast Cancer Cells Reveals Phosphoprotein-GRB2 Cell Signaling Networks
Q34727923A central multifunctional role of integrin-linked kinase at muscle attachment sites.
Q36804698A multidimensional chromatography technology for in-depth phosphoproteome analysis
Q33792902A phosphotyrosine switch for cargo sequestration at clathrin-coated buds
Q27318581A role for the CAL1-partner Modulo in centromere integrity and accurate chromosome segregation in Drosophila
Q33483334Akt phosphorylates both Tsc1 and Tsc2 in Drosophila, but neither phosphorylation is required for normal animal growth
Q36132333An Amino-Terminal Polo Kinase Interaction Motif Acts in the Regulation of Centrosome Formation and Reveals a Novel Function for centrosomin (cnn) in Drosophila
Q43898669An efficient parallelization of phosphorylated peptide and protein identification
Q37154424Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry
Q37257661Analysis of human plasma proteins: a focus on sample collection and separation using free-flow electrophoresis
Q37581410Applying mass spectrometry-based proteomics to genetics, genomics and network biology
Q33740219Assigning statistical significance to proteotypic peptides via database searches
Q53480286Biomarker identification for diagnosis of Alzheimer's disease.
Q39900602Bunched and Madm: a novel growth-regulatory complex?
Q27931205Cbk1 regulation of the RNA-binding protein Ssd1 integrates cell fate with translational control
Q37289381Cell cycle regulation of microtubule interactomes: multi-layered regulation is critical for the interphase/mitosis transition
Q35160380Centromeric binding and activity of Protein Phosphatase 4
Q27938723Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis
Q51772108Comparative analysis to guide quality improvements in proteomics.
Q42123804Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes
Q36179867Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
Q34051115DENR-MCT-1 promotes translation re-initiation downstream of uORFs to control tissue growth
Q90592084Deep phosphoproteome analysis of Schistosoma mansoni leads development of a kinomic array that highlights sex-biased differences in adult worm protein phosphorylation
Q39728441Differential phosphoproteomics of fibroblast growth factor signaling: identification of Src family kinase-mediated phosphorylation events
Q34474923Drosophila DBT Autophosphorylation of Its C-Terminal Domain Antagonized by SPAG and Involved in UV-Induced Apoptosis
Q34359747Drosophila heat shock response requires the JNK pathway and phosphorylation of mixed lineage kinase at a conserved serine-proline motif
Q39016748Drosophila mbm is a nucleolar myc and casein kinase 2 target required for ribosome biogenesis and cell growth of central brain neuroblasts
Q35214896ERK7 is a negative regulator of protein secretion in response to amino-acid starvation by modulating Sec16 membrane association
Q27937774Endocytosis of the Aspartic Acid/Glutamic Acid Transporter Dip5 Is Triggered by Substrate-Dependent Recruitment of the Rsp5 Ubiquitin Ligase via the Arrestin-Like Protein Aly2
Q83229314Evidence that a positive feedback loop drives centrosome maturation in fly embryos
Q35006547Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes, and mitochondria
Q34600735Evolutionary patterns of phosphorylated serines
Q41847944FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines
Q36172891Functional analysis of centrosomal kinase substrates in Drosophila melanogaster reveals a new function of the nuclear envelope component otefin in cell cycle progression
Q37079103Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
Q34049848Identification and validation of inhibitor-responsive kinase substrates using a new paradigm to measure kinase-specific protein phosphorylation index
Q27023765Immune-directed support of rich microbial communities in the gut has ancient roots
Q33399030In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution
Q39656212In-Depth Analysis of Protein Phosphorylation by Multidimensional Ion Exchange Chromatography and Mass Spectrometry
Q34377093Integrating phosphoproteomics in systems biology
Q37326474Intrakinetochore localization and essential functional domains of Drosophila Spc105.
Q52728128Kinesin 6 Regulation in Drosophila Female Meiosis by the Non-conserved N- and C- Terminal Domains.
Q33374624LC-MSsim--a simulation software for liquid chromatography mass spectrometry data
Q33687050Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms.
Q38204859Large-scale imaginal disc sorting: A protocol for "omics"-approaches.
Q39045929Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.
Q37845324Linking the proteins--elucidation of proteome-scale networks using mass spectrometry
Q33855393Madm (Mlf1 adapter molecule) cooperates with Bunched A to promote growth in Drosophila
Q38217990Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic
Q41911747Mechanistic insights into the role of mTOR signaling in neuronal differentiation
Q40987493Membrane Phosphoproteomics of Yeast Early Response to Acetic Acid: Role of Hrk1 Kinase and Lipid Biosynthetic Pathways, in Particular Sphingolipids
Q34373301Methods for investigation of targeted kinase inhibitor therapy using chemical proteomics and phosphorylation profiling.
Q57470882Microtubule nucleation by γ-tubulin complexes and beyond
Q38338880Mitotic exit control of the Saccharomyces cerevisiae Ndr/LATS kinase Cbk1 regulates daughter cell separation after cytokinesis
Q37243739Motif-specific sampling of phosphoproteomes
Q41278011Mutation of light-dependent phosphorylation sites of the Drosophila transient receptor potential-like (TRPL) ion channel affects its subcellular localization and stability.
Q91604913Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites
Q28535148Par-1 regulates tissue growth by influencing hippo phosphorylation status and hippo-salvador association
Q35748303PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications
Q35021699PhosphoHunter: An Efficient Software Tool for Phosphopeptide Identification
Q37346138PhosphoPep--a database of protein phosphorylation sites in model organisms
Q41710047Phosphoproteins in extracellular vesicles as candidate markers for breast cancer.
Q42199723Phosphoproteome analysis of Drosophila melanogaster embryos
Q45824406Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis
Q38673930Phosphoproteome of Toxoplasma gondii Infected Host Cells Reveals Specific Cellular Processes Predominating in Different Phases of Infection
Q37146736Phosphoproteomic analysis of human brain by calcium phosphate precipitation and mass spectrometry
Q35033565Phosphoproteomic analysis of protein phosphorylation networks in Tetrahymena thermophila, a model single-celled organism.
Q34156122Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast
Q37947084Phosphoproteomic analysis: an emerging role in deciphering cellular signaling in human embryonic stem cells and their differentiated derivatives
Q34097567Phosphoproteomics by mass spectrometry: insights, implications, applications and limitations
Q55331720Phosphorylation of conserved phosphoinositide binding pocket regulates sorting nexin membrane targeting.
Q33381458Predicting protein post-translational modifications using meta-analysis of proteome scale data sets
Q37038574Proteomics studies confirm the presence of alternative protein isoforms on a large scale
Q30987532Quantitative Analysis of Protein Complex Constituents and Their Phosphorylation States on a LTQ-Orbitrap Instrument
Q85195020Quantitative analysis of protein phosphorylation on a system-wide scale by mass spectrometry-based proteomics
Q55282001Recent advances in understanding oogenesis: interactions with the cytoskeleton, microtubule organization, and meiotic spindle assembly in oocytes.
Q28473351Receptor tyrosine kinase (RTK) mediated tyrosine phosphor-proteome from Drosophila S2 (ErbB1) cells reveals novel signaling networks
Q21135347Regulation of Alr1 Mg transporter activity by intracellular magnesium
Q36865153Retrograde traffic from the Golgi to the endoplasmic reticulum
Q34149201Riquiqui and minibrain are regulators of the hippo pathway downstream of Dachsous
Q30855397Sara phosphorylation state controls the dispatch of endosomes from the central spindle during asymmetric division
Q36973024Selected reaction monitoring for quantitative proteomics: a tutorial
Q35671262Signal processing by protein tyrosine phosphorylation in plants
Q59792096Spliceosome factors target timeless () mRNA to control clock protein accumulation and circadian behavior in Drosophila
Q43192631Starvation-induced MTMR13 and RAB21 activity regulates VAMP8 to promote autophagosome-lysosome fusion
Q33600052Strategies for quantitation of phosphoproteomic data
Q47308643Stress-induced Cdk5 activity enhances cytoprotective basal autophagy in Drosophila melanogaster by phosphorylating acinus at serine437.
Q39853507Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics
Q37829997Targeted large-scale analysis of protein acetylation
Q27329822The Drosophila microtubule-associated protein mars stabilizes mitotic spindles by crosslinking microtubules through its N-terminal region
Q42122474The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
Q35917935The apoptotic engulfment protein Ced-6 participates in clathrin-mediated yolk uptake in Drosophila egg chambers.
Q37069712The end of a monolith: Deconstructing the Cnn-Polo interaction
Q37823861The structure and function of endophilin proteins.
Q52731755Using the scan-x Web site to predict protein post-translational modifications.
Q36724856dbPAF: an integrative database of protein phosphorylation in animals and fungi
Q58610253iProteinDB: An Integrative Database of Post-translational Modifications
Q36873799mei-38 is required for chromosome segregation during meiosis in Drosophila females

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